Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S13A01NGRL0001_B19
(443 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0279 - 23794964-23795111,23795486-23795634,23796120-237962... 80 9e-16
01_06_1123 + 34671365-34671883,34672366-34672625,34673045-346731... 79 2e-15
07_01_0849 + 6896930-6896996,6897453-6897474,6897615-6897690,689... 77 6e-15
07_01_1199 + 11391638-11391718,11393477-11393590,11393690-113938... 59 2e-09
01_05_0105 - 18155135-18155297,18155379-18155515,18155621-181557... 38 0.003
06_03_0465 + 21049412-21049878,21049947-21050790,21050994-210511... 28 2.9
04_04_0962 + 29728983-29729034,29729622-29731369,29731656-297317... 27 5.1
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 27 5.1
04_04_1400 - 33259716-33260069,33260172-33260219,33260471-332605... 27 9.0
>05_05_0279 -
23794964-23795111,23795486-23795634,23796120-23796221,
23796309-23796384,23796578-23796588
Length = 161
Score = 79.8 bits (188), Expect = 9e-16
Identities = 42/100 (42%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Frame = +3
Query: 3 KIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKK 182
K LC +SG KIYPG G ++ D + F F NSKC+ R P K+TWT +YR++ KK
Sbjct: 4 KTELCRFSGQKIYPGKGIRFIRADSQVFLFANSKCKRYFHNRLKPAKLTWTAMYRKQHKK 63
Query: 183 G-QEEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEV 299
E IVGASL I KR KPEV
Sbjct: 64 DIHAEAVKKRRRTTKKPYSRSIVGASLEVIQKKRAEKPEV 103
>01_06_1123 + 34671365-34671883,34672366-34672625,34673045-34673143,
34673237-34675178,34675588-34675658,34676158-34676307,
34676963-34677038,34677131-34677232,34677707-34677855,
34678214-34678364
Length = 1172
Score = 79.0 bits (186), Expect = 2e-15
Identities = 40/97 (41%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Frame = +3
Query: 12 LCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKG-Q 188
LC +SG KIYPG G ++ D + F F NSKC+ R P K+TWT +YR++ KK
Sbjct: 1017 LCRFSGQKIYPGKGIRFIRADSQVFLFANSKCKRYFHNRLKPAKLTWTAMYRKQHKKDIH 1076
Query: 189 EEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEV 299
E IVGA+L I KR+ KPEV
Sbjct: 1077 AEAVKKRRRTTKKPYSRSIVGATLEVIQKKRSEKPEV 1113
>07_01_0849 +
6896930-6896996,6897453-6897474,6897615-6897690,
6897775-6897876,6898156-6898304,6898637-6898784
Length = 187
Score = 77.0 bits (181), Expect = 6e-15
Identities = 40/97 (41%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Frame = +3
Query: 12 LCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKG-Q 188
LC +SG KIYPG G ++ D + F F NSKC+ R P K+TWT +YR++ KK
Sbjct: 33 LCRFSGAKIYPGKGIRFIRADSQVFLFSNSKCKRYFHNRLKPAKLTWTAMYRKQHKKDIH 92
Query: 189 EEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEV 299
E IVGA+L I KR KPEV
Sbjct: 93 AEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEV 129
>07_01_1199 +
11391638-11391718,11393477-11393590,11393690-11393826,
11393905-11394064
Length = 163
Score = 58.8 bits (136), Expect = 2e-09
Identities = 25/51 (49%), Positives = 29/51 (56%)
Frame = +3
Query: 15 CAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYR 167
C + +YPGHG V+ D K F F SKC M+RNPRKV WT YR
Sbjct: 6 CWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYR 56
>01_05_0105 -
18155135-18155297,18155379-18155515,18155621-18155734,
18155768-18155806,18156838-18156993
Length = 202
Score = 38.3 bits (85), Expect = 0.003
Identities = 16/28 (57%), Positives = 17/28 (60%)
Frame = +3
Query: 84 FTFLNSKCEAAHLMRRNPRKVTWTVLYR 167
F F SKC M+RNPRKV WT YR
Sbjct: 67 FRFCRSKCHKNFKMKRNPRKVKWTKAYR 94
>06_03_0465 +
21049412-21049878,21049947-21050790,21050994-21051121,
21051232-21051247
Length = 484
Score = 28.3 bits (60), Expect = 2.9
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -2
Query: 325 IACSLCAFLTSGFMLRLAMMSLSEAPTIARWNFCVLLVRF 206
++C L A + SGF + M S A +A WN + V++
Sbjct: 181 LSCKLLAPVLSGFFISFVSMEAS-AAALAAWNLAAVWVQY 219
>04_04_0962 +
29728983-29729034,29729622-29731369,29731656-29731742,
29732035-29732199,29732437-29732526,29732863-29733027,
29733124-29733418,29733550-29733764,29733879-29733947,
29734107-29734184,29734466-29734529,29734658-29734897,
29734985-29735124
Length = 1135
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 234 GTFVSFLYVSWPVLLLGPF*IYVCI 160
GT + YVSWPVL++ I +CI
Sbjct: 742 GTILIISYVSWPVLIIFIPSILICI 766
>03_02_0740 -
10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 343 CSFAALIACSLCAFLTSGFMLRL 275
CSF+ L C+ CAFL S L+L
Sbjct: 108 CSFSYLTYCANCAFLVSTVSLQL 130
>04_04_1400 -
33259716-33260069,33260172-33260219,33260471-33260596,
33260850-33260900,33260963-33261055,33261217-33261272,
33261465-33261522,33262306-33262365,33262513-33262623,
33263368-33263949,33264026-33264097
Length = 536
Score = 26.6 bits (56), Expect = 9.0
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +3
Query: 75 GKTFTFLNSKCEAAHL-MRRNPRKVTWTVLY 164
G L+S A H+ +RRNP+ + W ++Y
Sbjct: 469 GSAIRQLDSIFSAGHIFLRRNPKALVWAMVY 499
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,376,972
Number of Sequences: 37544
Number of extensions: 193143
Number of successful extensions: 474
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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