Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S13A01NGRL0001_B17
(319 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0114 - 857835-859464,860403-860444,860530-860537 29 0.79
11_02_0085 - 8162346-8162942,8165568-8166100,8166180-8166906 27 4.2
11_06_0226 + 21461174-21462018,21462508-21464439,21464746-21464845 26 5.6
01_01_0261 + 2119519-2121033 26 5.6
08_01_0204 + 1642169-1642687 26 7.4
03_02_0350 - 7734494-7734952,7735765-7736133 26 7.4
05_01_0343 + 2698289-2698786,2698851-2699309 25 9.7
04_04_1576 - 34551095-34552645 25 9.7
04_04_1548 - 34313212-34313304,34313518-34313632,34314097-343142... 25 9.7
01_06_1551 - 38200370-38201061,38202071-38202109,38203967-38204897 25 9.7
>02_01_0114 - 857835-859464,860403-860444,860530-860537
Length = 559
Score = 29.1 bits (62), Expect = 0.79
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -3
Query: 203 LPSQVQWTSLTLVTVNQSQPVPSSVMLGDMPMETALPRNLSI 78
+ S V WT+L V QP+ + + G M +E P +++I
Sbjct: 227 MKSTVSWTALITGHVQDKQPIQALELFGKMLLEGHRPNHITI 268
>11_02_0085 - 8162346-8162942,8165568-8166100,8166180-8166906
Length = 618
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -3
Query: 206 VLPSQVQWTSLTLVTVNQSQPVPSSVMLGDMPM 108
VLPS +QW ++ + V P+ + +LGD P+
Sbjct: 568 VLPSHLQWLAIAICFVPALLPILTK-LLGDWPI 599
>11_06_0226 + 21461174-21462018,21462508-21464439,21464746-21464845
Length = 958
Score = 26.2 bits (55), Expect = 5.6
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +1
Query: 124 NITELGTGCDWFTVTKVSEVHCTCDGRTNVPLISIKQESD--KNSDARFAAVEIKSFAEV 297
NIT G F K+ EV RTNV I++ + KN+D A +++SF +
Sbjct: 513 NITAEGNFVKIFK--KLHEVCRLSSQRTNVRRIALHDNWNQLKNNDLDVALTQLRSFNAI 570
Query: 298 EQTV 309
E T+
Sbjct: 571 ECTI 574
>01_01_0261 + 2119519-2121033
Length = 504
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 215 GTLVLPSQVQWTSLTLVTVNQSQPVPSSVMLGD 117
G L PSQ+ T+ + V++ P S++ GD
Sbjct: 298 GPLSFPSQISATTFSYCLVDRDSPSSSTLQFGD 330
>08_01_0204 + 1642169-1642687
Length = 172
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 299 STSAKDFISTAANRASEFLSDSCLIEING 213
S S F+ T A A +FLS C++ I G
Sbjct: 116 SCSGVQFVETPAFLAGDFLSIECIVTIFG 144
>03_02_0350 - 7734494-7734952,7735765-7736133
Length = 275
Score = 25.8 bits (54), Expect = 7.4
Identities = 9/33 (27%), Positives = 18/33 (54%)
Frame = -3
Query: 170 LVTVNQSQPVPSSVMLGDMPMETALPRNLSISA 72
L+ P+P+ + D+P T++P + +SA
Sbjct: 149 LMPAPPQMPMPAPFSISDLPSSTSVPTTVDLSA 181
>05_01_0343 + 2698289-2698786,2698851-2699309
Length = 318
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 142 TGCDWFTVTKVSEVHCTCDGRTNVPLISIKQESDK 246
T CDWF V +VH C L++ ++ +DK
Sbjct: 275 TKCDWFQVCTYIDVH-KCPQNKKNRLVTSRRIADK 308
>04_04_1576 - 34551095-34552645
Length = 516
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -3
Query: 191 VQWTSLTLVTVNQSQPVPSSVMLGDMPMETALPRNLSISA 72
V WT L ++ +P S ++ DM ++ P N +I A
Sbjct: 311 VSWTELAAGLLHCGEPAESLRVVSDMILDGIRPNNYTIVA 350
>04_04_1548 -
34313212-34313304,34313518-34313632,34314097-34314287,
34314391-34315379,34315989-34316136,34316349-34316424,
34316946-34317110,34317196-34317286,34318069-34318153,
34318256-34318411,34318479-34318586,34318713-34318811,
34318927-34319036,34319139-34319208
Length = 831
Score = 25.4 bits (53), Expect = 9.7
Identities = 21/70 (30%), Positives = 31/70 (44%)
Frame = -3
Query: 293 SAKDFISTAANRASEFLSDSCLIEINGTLVLPSQVQWTSLTLVTVNQSQPVPSSVMLGDM 114
S + I+ A LS S + + L QVQ + +QS VP+S +L
Sbjct: 466 SQQQIINPDAQNIQTMLSPSAIQQQLQQLQQMQQVQNDQKQKIQPDQSYQVPTSAVL--- 522
Query: 113 PMETALPRNL 84
P T+LP +L
Sbjct: 523 PSPTSLPSHL 532
>01_06_1551 - 38200370-38201061,38202071-38202109,38203967-38204897
Length = 553
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 112 GISPNITELGTGCDWFTV 165
G+ PN+T G GC + TV
Sbjct: 225 GLPPNVTVCGAGCHYKTV 242
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,803,439
Number of Sequences: 37544
Number of extensions: 150674
Number of successful extensions: 383
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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