Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S13A01NGRL0001_B17
         (319 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK096821-1|BAC04869.1|  405|Homo sapiens protein ( Homo sapiens ...    29   2.3  
AC023270-2|AAX88845.1|  405|Homo sapiens unknown protein.              29   2.3  
BC011992-1|AAH11992.1|  860|Homo sapiens KIAA1468 protein protein.     29   3.0  
AY392880-1|AAS85822.1|  131|Homo sapiens immunoglobulin heavy ch...    28   5.2  
AB040901-1|BAA95992.1|  985|Homo sapiens KIAA1468 protein protein.     28   5.2  

>AK096821-1|BAC04869.1|  405|Homo sapiens protein ( Homo sapiens
           cDNA FLJ39502 fis, clone PROST2017098. ).
          Length = 405

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = -3

Query: 305 VCSTSAKDFISTAANRASEFLSDSCLIEINGTLVLP-SQVQWTSLTLVTVNQS 150
           VC   A  +++ A N +S  LS + ++ + G   LP ++V W +L +V V+ S
Sbjct: 346 VCKADAGLYVARAQN-SSGALSSNVILHVTGNCRLPITRVNWITLCVVYVSVS 397


>AC023270-2|AAX88845.1|  405|Homo sapiens unknown protein.
          Length = 405

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = -3

Query: 305 VCSTSAKDFISTAANRASEFLSDSCLIEINGTLVLP-SQVQWTSLTLVTVNQS 150
           VC   A  +++ A N +S  LS + ++ + G   LP ++V W +L +V V+ S
Sbjct: 346 VCKADAGLYVARAQN-SSGALSSNVILHVTGNCRLPITRVNWITLCVVYVSVS 397


>BC011992-1|AAH11992.1|  860|Homo sapiens KIAA1468 protein protein.
          Length = 860

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
 Frame = +1

Query: 46  ISALLVVAHADIDKFLGRAVSIGISPNITELGTGCDWFTVTKVSE-VHCTCDGRTNVPLI 222
           +  LL ++HA +D      V +G +P   EL     W+ V   S  V CT      +  +
Sbjct: 578 VMTLLSLSHAPLDSLKASFVELGANPAYHELLLTVLWYGVVHTSALVRCTA---ARMFEL 634

Query: 223 SIKQESDKNSDARFAAVEIKSFAEVEQTVKTA 318
           +++  S+   D R A   +   ++ E +V+ A
Sbjct: 635 TLRGMSEALVDKRVAPALVTLSSDPEFSVRIA 666


>AY392880-1|AAS85822.1|  131|Homo sapiens immunoglobulin heavy chain
           protein.
          Length = 131

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 233 CLIEINGTLVLPSQVQWTSLTLVTVNQSQPVPSSV 129
           C IEI GT ++ S   W   T VTV+ + P    V
Sbjct: 92  CAIEIEGTSMISSFDLWGQGTQVTVSSASPTSPKV 126


>AB040901-1|BAA95992.1|  985|Homo sapiens KIAA1468 protein protein.
          Length = 985

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +1

Query: 46  ISALLVVAHADIDKFLGRAVSIGISPNITELGTGCDWFTVTKVSE-VHCT 192
           +  LL ++HA +D      V +G +P   EL     W+ V   S  V CT
Sbjct: 703 VMTLLSLSHAPLDSLKASFVELGANPAYHELLLTVLWYGVVHTSALVRCT 752


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,843,893
Number of Sequences: 237096
Number of extensions: 788501
Number of successful extensions: 1721
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1721
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1511340428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)