Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S13A01NGRL0001_B15
         (475 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77783-1|AAC15910.1| 1336|Homo sapiens N-methyl-D-aspartate rece...    29   8.2  
AB209292-1|BAD92529.1|  610|Homo sapiens N-methyl-D-aspartate re...    29   8.2  

>U77783-1|AAC15910.1| 1336|Homo sapiens N-methyl-D-aspartate receptor
            2D subunit precursor protein.
          Length = 1336

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 14   KAELPRWRRSKLVDPPG*VTLKDG 85
            +A + RWRR+K   PPG   L DG
Sbjct: 937  RASVDRWRRTKGAGPPGGAGLADG 960


>AB209292-1|BAD92529.1|  610|Homo sapiens N-methyl-D-aspartate
           receptor subunit 2D precursor variant protein.
          Length = 610

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 14  KAELPRWRRSKLVDPPG*VTLKDG 85
           +A + RWRR+K   PPG   L DG
Sbjct: 211 RASVDRWRRTKGAGPPGGAGLADG 234


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,835,627
Number of Sequences: 237096
Number of extensions: 1193830
Number of successful extensions: 1836
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1836
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4156838854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)