Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S13A01NGRL0001_B14
         (455 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0517 + 25841292-25842099,25842256-25842308                       31   0.58 
05_06_0151 - 25999366-26000044,26004820-26005637                       27   9.5  
04_04_1329 - 32691667-32691819,32691920-32692081                       27   9.5  
04_03_0655 + 18436363-18436901,18436984-18437772,18437952-184380...    27   9.5  

>04_04_0517 + 25841292-25842099,25842256-25842308
          Length = 286

 Score = 30.7 bits (66), Expect = 0.58
 Identities = 21/51 (41%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
 Frame = -1

Query: 452 RAVSRTNRRPRWPVGMSRHRKL---GRALRYPRSSMAPYRSSAHRRVPRCT 309
           R  SRT  RPRW  G S  R+     R      SS A    SA RR P C+
Sbjct: 175 RGDSRTTSRPRWSPGASTGRRPTCGARGWSCTCSSPAARSRSAARRPPTCS 225


>05_06_0151 - 25999366-26000044,26004820-26005637
          Length = 498

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 245 ITDRPSDVSIQAYLQELRKHNVC 313
           IT + +D S+  YL  +R+HN C
Sbjct: 76  ITTKDNDFSLLGYLDLVRRHNEC 98


>04_04_1329 - 32691667-32691819,32691920-32692081
          Length = 104

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -3

Query: 447 SISNQSSTTLAGGNVPSS*ARSRTSI 370
           S S +S +  AG +VPSS + SRTSI
Sbjct: 2   SSSRRSRSRRAGSSVPSSSSSSRTSI 27


>04_03_0655 +
           18436363-18436901,18436984-18437772,18437952-18438028,
           18438034-18438248
          Length = 539

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -1

Query: 449 AVSRTNRRPRWPVGMSRHRKLG 384
           A +   R   WP  M RHRKLG
Sbjct: 404 AAAAPGREIMWPPAMFRHRKLG 425


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,206,640
Number of Sequences: 37544
Number of extensions: 270212
Number of successful extensions: 642
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)