Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S13A01NGRL0001_B14
         (455 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein pr...    24   2.9  
Z49833-1|CAA89994.1|  250|Anopheles gambiae serine proteinase pr...    23   6.7  
M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles ...    22   8.9  
AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific tran...    22   8.9  

>AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein
           protein.
          Length = 476

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -3

Query: 180 MTTFASTQVPKYKSEEMSHNITFAPPGGNSKHFKLDRSPSVKQTN 46
           +T F+  +V  ++ E +S N TF+ P       +L  +PS +  N
Sbjct: 415 LTQFSELRVKAWRREFLSKNATFSRPVSVVLKGRLLENPSRRLRN 459


>Z49833-1|CAA89994.1|  250|Anopheles gambiae serine proteinase
           protein.
          Length = 250

 Score = 22.6 bits (46), Expect = 6.7
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +2

Query: 314 TVVRVCEPSYDTAPLKSEGIEVRDLAYDDGTFP 412
           T++ VC P         EGI        DGTFP
Sbjct: 114 TIIPVCLPPEGNTYAGQEGIVTGWGKLGDGTFP 146


>M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 574

 Score = 22.2 bits (45), Expect = 8.9
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -1

Query: 401 RHRKLGRALRYPRSSMAPYRSSAHRRVPR 315
           R R  G+A   PRS   P +    R++ R
Sbjct: 267 RRRYRGKATGKPRSQQQPQQQQQQRQLQR 295


>AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific
           transcription factor FRU-MA protein.
          Length = 960

 Score = 22.2 bits (45), Expect = 8.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 453 SRSISNQSSTTLAGGN 406
           S S S+ SST+L GGN
Sbjct: 799 SSSSSSASSTSLCGGN 814


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 507,620
Number of Sequences: 2352
Number of extensions: 10108
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 39119412
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)