Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S13A01NGRL0001_B12
(483 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1086 + 8539821-8540024,8540132-8540237,8540635-8540660 87 7e-18
01_06_0783 + 31975261-31975398,31975583-31975726 85 2e-17
01_05_0324 - 20946774-20946935,20947301-20947780 83 1e-16
06_03_0116 + 16816970-16817209,16817328-16817461,16818716-16818749 77 1e-14
02_04_0361 - 22359278-22359439,22362291-22362728 77 1e-14
02_02_0390 - 9640749-9641312 33 0.12
12_02_0749 - 22758317-22760407 29 1.5
12_01_0612 - 5044639-5044858,5045010-5045167,5045440-5045684,504... 29 2.0
12_01_0504 + 3999157-4000470 28 4.5
12_01_1014 - 10309444-10309905 27 6.0
02_04_0348 - 22199564-22200412 27 7.9
>01_01_1086 + 8539821-8540024,8540132-8540237,8540635-8540660
Length = 111
Score = 87.0 bits (206), Expect = 7e-18
Identities = 38/58 (65%), Positives = 45/58 (77%)
Frame = +2
Query: 89 KAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNF 262
K +K+ADM EEM+Q+A D A A EK +EKDIA +IKKEFDK + PTWHCIVGRNF
Sbjct: 46 KIQLKSADMKEEMRQEAFDIARVAFEKHTMEKDIAEYIKKEFDKNHGPTWHCIVGRNF 103
>01_06_0783 + 31975261-31975398,31975583-31975726
Length = 93
Score = 85.4 bits (202), Expect = 2e-17
Identities = 40/89 (44%), Positives = 58/89 (65%), Gaps = 2/89 (2%)
Frame = +2
Query: 77 MCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIE--KDIAAFIKKEFDKKYNPTWHCIV 250
M + KA++++ DM +MQ A+ A +AL++F++ + IAA IKKEFD + P W C+V
Sbjct: 1 MLEGKAMVEDTDMPVKMQLQAMSAAYKALDRFDVLDCRSIAAHIKKEFDMIHGPGWQCVV 60
Query: 251 GRNFGSYVTHETRHFIYFYLGQVAILLFK 337
G +FG Y TH FIYF LG + L+FK
Sbjct: 61 GASFGCYFTHSKGSFIYFKLGALRFLVFK 89
>01_05_0324 - 20946774-20946935,20947301-20947780
Length = 213
Score = 83.0 bits (196), Expect = 1e-16
Identities = 39/81 (48%), Positives = 56/81 (69%), Gaps = 3/81 (3%)
Frame = +2
Query: 107 ADMSEEMQQDAVDCATQA---LEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVT 277
ADMS MQ A CA ++ L+KF+ + +A +KKEFDK Y PTWHCIVG ++GS+VT
Sbjct: 125 ADMSPFMQLHAFRCAKRSHDSLDKFS-SRQLAHDVKKEFDKVYGPTWHCIVGTSYGSFVT 183
Query: 278 HETRHFIYFYLGQVAILLFKS 340
H F+YF + ++ ++LFK+
Sbjct: 184 HARGCFLYFSMDKIIVMLFKT 204
>06_03_0116 + 16816970-16817209,16817328-16817461,16818716-16818749
Length = 135
Score = 76.6 bits (180), Expect = 1e-14
Identities = 35/64 (54%), Positives = 44/64 (68%)
Frame = +2
Query: 77 MCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGR 256
+ K IK+A+M EEM+Q+A D A EK +EKDI +IK EFDK + PTWHCIVG
Sbjct: 54 LAGHKIQIKSANMKEEMRQEAFDIDRVAFEKHTMEKDIVEYIK-EFDKNHGPTWHCIVGH 112
Query: 257 NFGS 268
NFG+
Sbjct: 113 NFGT 116
>02_04_0361 - 22359278-22359439,22362291-22362728
Length = 199
Score = 76.6 bits (180), Expect = 1e-14
Identities = 38/83 (45%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Frame = +2
Query: 98 IKNADMSEEMQQDAVDCATQALEKFNI--EKDIAAFIKKEFDKKYNPTWHCIVGRNFGSY 271
++ ADM MQ+ AV A A+ K +A +KKEFD Y P WHCIVG FGSY
Sbjct: 108 VRAADMPLAMQRRAVRLAFDAVAAMPRLDSKRLALALKKEFDATYGPAWHCIVGTGFGSY 167
Query: 272 VTHETRHFIYFYLGQVAILLFKS 340
VTH F+YF + +V +LLF++
Sbjct: 168 VTHSVGGFLYFSVDKVYVLLFRT 190
>02_02_0390 - 9640749-9641312
Length = 187
Score = 33.1 bits (72), Expect = 0.12
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = -3
Query: 337 LKEQYGDLTQVEVDEVTGLVRHVRAKVAAHDAVPCRIVLLIKFLLDESRNVLFNVK 170
L+E+ G+ + EVDE V A+V AH A+P V L++ L + N N K
Sbjct: 15 LEEEEGEALEGEVDEGAAGVGEEAAEVCAHHALPPHPVPLVELLQHQQTNNKSNPK 70
>12_02_0749 - 22758317-22760407
Length = 696
Score = 29.5 bits (63), Expect = 1.5
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Frame = -1
Query: 270 YEPKLRPTMQCHVGLYFLSNSFLMKAAMSFSMLNFSRACVAQSTA-----SCCISSLMSA 106
+E L P+ CH LY LS + K A+ F +R + STA SC + L +
Sbjct: 322 HETSLHPSA-CHTMLYCLSKKDMAKEAVEFEKRMSARGYLLDSTAFGIVMSCALKCLEVS 380
Query: 105 FLITALRSHI 76
L L S I
Sbjct: 381 DLCELLDSFI 390
>12_01_0612 -
5044639-5044858,5045010-5045167,5045440-5045684,
5046006-5046294,5047540-5048561,5049320-5049389
Length = 667
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 101 KNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYN 229
+N + EE Q +DC + E+F+ E+D IK +KK N
Sbjct: 590 ENCKLREEQIQRIIDCQVKDAEEFDAEQD--ELIKTHEEKKAN 630
>12_01_0504 + 3999157-4000470
Length = 437
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Frame = -2
Query: 185 PFQC*ISLGL---VSHNPLHPAASPHSCQH 105
PF +SL +SH LHP A+PH+ +H
Sbjct: 60 PFSVSLSLAAPPAISHVHLHPMAAPHTLKH 89
>12_01_1014 - 10309444-10309905
Length = 153
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -1
Query: 219 LSNSFLMKAAMSFSMLNFSRACVAQSTASCCISSLM 112
L+ +M+ +M +FSR C Q T C+++L+
Sbjct: 110 LTGELFWSLSMAVAMFSFSRVCRLQRTPLHCLNTLL 145
>02_04_0348 - 22199564-22200412
Length = 282
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 360 TLVPKFFVSRRTQYYPVPLVCRLSRASPTLL 452
TL+PK R P P VC + R +P +L
Sbjct: 170 TLLPKLLFLRDATGMPDPAVCAILRRAPAIL 200
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,696,928
Number of Sequences: 37544
Number of extensions: 209933
Number of successful extensions: 594
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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