Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S13A01NGRL0001_B12
         (483 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    24   0.74 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   1.7  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    21   5.2  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    21   5.2  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    21   6.9  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    21   6.9  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 24.2 bits (50), Expect = 0.74
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 253 PQLWLVRDARDPSLHLLL 306
           P+ WLV    +PSLH LL
Sbjct: 34  PEHWLVYPEPNPSLHYLL 51


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 83  HTSCQLFDITSEVQENFSRKDFDNRAF 3
           HT     D  S+ QEN + K+ DN+ +
Sbjct: 227 HTLNHNSDKMSDQQENLTLKEVDNKVY 253


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +3

Query: 324 YCSLRVVRPFVCTLVP 371
           +C   V+ PF C + P
Sbjct: 48  FCGPNVINPFFCDMSP 63


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +3

Query: 324 YCSLRVVRPFVCTLVP 371
           +C   V+ PF C + P
Sbjct: 47  FCGPNVINPFFCDMSP 62


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = -2

Query: 158 LVSHNPLHPAASPHSCQH 105
           L  H   H    P SCQH
Sbjct: 58  LQGHIRTHTGEKPFSCQH 75


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -2

Query: 158 LVSHNPLHPAASPHSCQH 105
           L +H  LH    P+ C H
Sbjct: 25  LKTHMRLHTGEKPYHCSH 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,165
Number of Sequences: 438
Number of extensions: 2261
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)