Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S13A01NGRL0001_B11
(336 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547 29 0.71
11_04_0371 - 16913079-16913173,16913427-16913547 27 2.9
07_03_0957 + 22877348-22877446,22877903-22877971,22878619-22879392 27 3.8
04_04_1060 - 30473509-30473619,30473815-30473850,30474063-304740... 27 3.8
03_01_0456 - 3495537-3496205,3496304-3496364,3496447-3496829,349... 27 3.8
02_01_0120 + 884467-887649 27 5.0
01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,437... 26 6.6
11_06_0213 - 21321676-21322069,21322311-21322507,21322818-213234... 26 8.7
02_05_0685 + 30891289-30891810,30892740-30892915,30893379-308934... 26 8.7
>01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547
Length = 388
Score = 29.5 bits (63), Expect = 0.71
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = -3
Query: 235 RTFGTLQKHCGTSHSPDGGSISWTVGLSHDGSACCGQYNTECSPAGHFLIG 83
++F +L K CG HSP G ++ + + +A P G F G
Sbjct: 143 KSFASLPKDCGGGHSPRPGELAKAMSCAAAATATASAAGGMSVPCGVFFYG 193
>11_04_0371 - 16913079-16913173,16913427-16913547
Length = 71
Score = 27.5 bits (58), Expect = 2.9
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +1
Query: 49 GYGSHHSTVKEFL*ENARLVNTQCCTAHNKQSRHVTTLPSMRWTHHQGCATYRSASA 219
G GSH+ K F R + Q H ++ H+T + S R H+Q + S+
Sbjct: 11 GSGSHNYR-KSFCVRAERHIAAQKAGPHTREVAHLTNVVSSRTCHYQPLCLHEKLSS 66
>07_03_0957 + 22877348-22877446,22877903-22877971,22878619-22879392
Length = 313
Score = 27.1 bits (57), Expect = 3.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 268 DSLMHCPVLRFRTFGTLQKHCGTSHSPDGGS 176
+ + CP RF T G L +HC SH + S
Sbjct: 247 EQCVQCPA-RFSTVGALIEHCEKSHQSNSQS 276
>04_04_1060 -
30473509-30473619,30473815-30473850,30474063-30474095,
30474246-30474335,30474466-30475215
Length = 339
Score = 27.1 bits (57), Expect = 3.8
Identities = 16/60 (26%), Positives = 24/60 (40%)
Frame = +1
Query: 91 ENARLVNTQCCTAHNKQSRHVTTLPSMRWTHHQGCATYRSASATYRTFETLKPDSASNCQ 270
++AR T CCT H S+H+ H+ + AS T R + + S Q
Sbjct: 27 DSARHKATNCCTRHGCSSKHLAGKDKQT---HRAATAAKEASETPRRSQIFRKPSTRTPQ 83
>03_01_0456 -
3495537-3496205,3496304-3496364,3496447-3496829,
3496924-3497613
Length = 600
Score = 27.1 bits (57), Expect = 3.8
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -3
Query: 241 RFRTFGTLQKHCGTSHSPDGGSISWTVGLSHDGSA 137
RF ++G + G DGGS+S T+GL H +A
Sbjct: 525 RFVSYGDMAD-LGGGGGYDGGSVSLTLGLQHCNNA 558
>02_01_0120 + 884467-887649
Length = 1060
Score = 26.6 bits (56), Expect = 5.0
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 7/59 (11%)
Frame = -3
Query: 226 GTLQKHCGTSHSPDGGSISWTVGLSH-------DGSACCGQYNTECSPAGHFLIGIP*P 71
G L G S DGG W G+ + DG CC C AG ++G+ P
Sbjct: 33 GDLAALRGFSAGLDGGVDGWPAGVGNASSSSTSDGGDCCAWRGVACDEAGE-VVGVVLP 90
>01_01_0588 +
4372877-4372949,4374328-4376262,4376940-4377015,
4378900-4378970,4379038-4379144,4379241-4379711,
4379791-4379976,4380132-4380425,4380820-4381434,
4382219-4382615,4382768-4382850,4383397-4383567,
4384046-4384243,4384754-4385314,4385401-4385460,
4385553-4385869,4385980-4386403,4386539-4387006,
4387093-4387209,4387306-4387427,4387506-4388247,
4388453-4388485,4388625-4388879,4388975-4389160,
4390115-4390453,4391293-4392045
Length = 3017
Score = 26.2 bits (55), Expect = 6.6
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 210 CFCNVPNVRNLKTGQCIKLS 269
CF ++P V++L GQC S
Sbjct: 55 CFSSIPRVKSLAWGQCYNAS 74
>11_06_0213 -
21321676-21322069,21322311-21322507,21322818-21323477,
21323522-21323578,21324741-21324848
Length = 471
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Frame = -3
Query: 214 KHCGTSHSPDGGSISWTV--GLSHDGS 140
K G PDG + WTV G+S DG+
Sbjct: 206 KETGVEQRPDGVTCKWTVIRGVSADGA 232
>02_05_0685 +
30891289-30891810,30892740-30892915,30893379-30893492,
30893846-30893954,30894038-30894124,30895137-30895736,
30895823-30896101,30896808-30896897,30897151-30897507,
30897924-30898160,30898733-30898953,30899856-30899955,
30900042-30900188,30900287-30900385
Length = 1045
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 108 EHSVLYCPQQAEPSCDNPTVHEMDPPSG 191
E +V+YCP++ + C + TV D +G
Sbjct: 305 EETVIYCPKEVQLICLSATVANPDELAG 332
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,153,376
Number of Sequences: 37544
Number of extensions: 198897
Number of successful extensions: 545
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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