Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S13A01NGRL0001_B10
(462 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12B10.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.26
SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces pombe... 29 0.35
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ... 27 1.1
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 27 1.8
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 27 1.8
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 27 1.8
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom... 26 2.4
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 26 2.4
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 25 4.3
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 25 4.3
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 25 4.3
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 25 5.6
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||... 25 5.6
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 25 5.6
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 25 5.6
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 25 5.6
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 25 7.4
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 24 9.8
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo... 24 9.8
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 24 9.8
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr... 24 9.8
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 24 9.8
SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr 3|... 24 9.8
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 24 9.8
>SPAC12B10.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 235
Score = 29.5 bits (63), Expect = 0.26
Identities = 12/38 (31%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Frame = +3
Query: 213 IKNKGIEAKKPTLDDLNEFKKITLNA--DKNKELSEKV 320
++ K I+ ++PTL +L+ + I +NA +++ LS+K+
Sbjct: 4 VQRKRIDIRRPTLAELSSIRSIAMNALNGQSRNLSQKI 41
>SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 395
Score = 29.1 bits (62), Expect = 0.35
Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Frame = +3
Query: 192 DPWCKYVIKNKG-IEAKKPTLDDLNEFKKITLNADKNKELSEKVSIFQGDITNLEVDAIV 368
DP+ + G ++ KKP L F + K + +IF D N I
Sbjct: 240 DPYFRLTRDVSGRLKFKKPALLHSRFFPALQGPQSKMSASKDSSAIFMTDTPN----KIK 295
Query: 369 NAANSHLKAGGGVDGAIHRAAG 434
N N H +GGG IHR G
Sbjct: 296 NKINRHAFSGGGATIEIHREKG 317
>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 621
Score = 27.5 bits (58), Expect = 1.1
Identities = 26/119 (21%), Positives = 55/119 (46%), Gaps = 9/119 (7%)
Frame = +3
Query: 30 FRNIKGAQQNCLFSLLKMTTQAKWKTEKERILSL--SLEEKRKLYKSSNY-----ITLDN 188
+ ++K N F+ K T + +W EK + SL +++ K Y+ Y + + +
Sbjct: 286 YTDVKSHSNN--FAKFKATEKREWVKEKIDLESLLGTIQTNLKTYQLRKYEPPAGLKIVD 343
Query: 189 VDPWCKYVIKNKGIEAK--KPTLDDLNEFKKITLNADKNKELSEKVSIFQGDITNLEVD 359
++ K + + ++K + ++ E +I AD+ S+ +S +ITNL+ D
Sbjct: 344 LERQWKDFLSEEANQSKLINTHMREIKESMRIAF-ADRANSFSKMLSTISNEITNLQGD 401
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 26.6 bits (56), Expect = 1.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 454 PSSCSRDPAARCIAPSTPPPAFR 386
PSS S+ AA+ I P P PA +
Sbjct: 896 PSSSSKSDAAKSIKPQKPEPALK 918
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 26.6 bits (56), Expect = 1.8
Identities = 15/24 (62%), Positives = 18/24 (75%)
Frame = +3
Query: 90 QAKWKTEKERILSLSLEEKRKLYK 161
+AK K EKERIL+L EEK+ YK
Sbjct: 55 KAKEKKEKERILAL--EEKKTNYK 76
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 26.6 bits (56), Expect = 1.8
Identities = 21/79 (26%), Positives = 37/79 (46%)
Frame = +3
Query: 114 ERILSLSLEEKRKLYKSSNYITLDNVDPWCKYVIKNKGIEAKKPTLDDLNEFKKITLNAD 293
ERI+ LSL E RK + + + + P Y +++K E + L+ + F ++ +
Sbjct: 490 ERIIILSLIELRKTIEENKDVDYQIILPVVLYSLQSKDTEVRSRALNLILTFLEL---RN 546
Query: 294 KNKELSEKVSIFQGDITNL 350
+N E S + D NL
Sbjct: 547 ENLEFSIIYGMDDNDNKNL 565
>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 396
Score = 26.2 bits (55), Expect = 2.4
Identities = 21/56 (37%), Positives = 31/56 (55%)
Frame = +3
Query: 120 ILSLSLEEKRKLYKSSNYITLDNVDPWCKYVIKNKGIEAKKPTLDDLNEFKKITLN 287
+ SLSL E + KS + +L+N+ YV+ KG+E KP L D +E +T N
Sbjct: 178 VCSLSLIEFLQNSKSRTF-SLENL-----YVLGVKGLELLKPVLLDGSEDDTLTSN 227
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 26.2 bits (55), Expect = 2.4
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +3
Query: 228 IEAKKPTLDDLNEFKKITLNADKNKELSEKVSIFQGDITNLEVDAIVN 371
+E + DL KK+ A +N EL+EK+ +F+ +N D ++
Sbjct: 219 LEVSSRQVQDLE--KKLAGLAQQNTELNEKIQLFEQKRSNYSSDGNIS 264
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 25.4 bits (53), Expect = 4.3
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = +3
Query: 123 LSLSLEEKRKLYKSSNYITLDNVDPWCKYVIKNKGIEAKK--PTLDDLNEFKKITLN-AD 293
LSLSLE+K + K + D +D ++ +E KK T + N+ + + LN +
Sbjct: 367 LSLSLEKKLEAKKQKEKVYKDKLDELAN--LETMVLEKKKAVATREAANKIRLVDLNDLE 424
Query: 294 KNKELSEKVS 323
K+LS +S
Sbjct: 425 LQKDLSTYLS 434
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 25.4 bits (53), Expect = 4.3
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 51 QQNCLFSLLKMTTQAKWKTEKERILSLSLEEKRKLYKS 164
QQNCL +L T+ ++I SLE R++Y S
Sbjct: 1342 QQNCLIDMLISFTELCKNGTNQKISLQSLEIIREVYSS 1379
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 25.4 bits (53), Expect = 4.3
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -3
Query: 337 SPWNIDTFSDSSLFLSAFNVIFLNSLRSSSVGFFASIPL 221
S W +S S L + NV FLN S+S F +P+
Sbjct: 1521 SVWLSQAYSPSVLQGTTENVAFLNKAFSASANLFDVLPV 1559
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.0 bits (52), Expect = 5.6
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +3
Query: 252 DDLNEFKKITLNADKNKELSEKVSIFQGDITNLEVDAIVNAANSHLK 392
DD+ + + + NAD ++E+ E S+ + ++ N E ++ N L+
Sbjct: 376 DDITQDELNSSNADVDEEVIETTSLEEKNVDNQEFVTSISNGNQTLE 422
>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 25.0 bits (52), Expect = 5.6
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +3
Query: 240 KPTLDDLNEFKKITLNADKNKELSEKVSIFQGDITNLEVDAIVNAAN 380
+P + LNE ++ +N +K SE S N+++D +VN+++
Sbjct: 82 RPASEGLNEGEQSYINKRISKVNSELRSFISKTGLNVDLDKVVNSSD 128
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 25.0 bits (52), Expect = 5.6
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +3
Query: 66 FSLLKMTTQAKWKTEKERILSLSLEEKRKLYKSSNYITLDNVDPWC 203
FS+ +KW E ER++ E R+ + + I +D +D C
Sbjct: 191 FSISSSDLVSKWMGESERLVRQLFEMARE--QKPSIIFIDEIDSLC 234
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.0 bits (52), Expect = 5.6
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 186 NVDPWCKYVIKNKGIEAKKPTLDDLNE-FKKITLNADKNKELSEKVS 323
N+D +I+N+G P L + N+ FK+ LN D ++ +S+ S
Sbjct: 269 NIDEDITQMIQNEGTGTTIPPLPEFNDYFKENGLNYDIDQLISKAPS 315
>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 673
Score = 25.0 bits (52), Expect = 5.6
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +3
Query: 240 KPTLDDLNEFKKITLNADKNKELSEKVSIFQGDITNLEVDAIVNAAN 380
+P + LNE ++ +N +K SE S N+++D +VN+++
Sbjct: 82 RPASEGLNEGEQSYINKRISKVNSELRSFISKTGLNVDLDKVVNSSD 128
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 24.6 bits (51), Expect = 7.4
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +3
Query: 207 YVIKNKGIEAKKP-TLDDLNEFKKITLNADKNKELSEKVSI 326
+V K++ ++A K T DDL E I +KN E+S+ +I
Sbjct: 68 FVEKSEQVKANKQVTADDLLEAHSIPQLKNKNDEVSQAKNI 108
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 24.2 bits (50), Expect = 9.8
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 222 KGIEAKKPTLDDLNEFKKITLNADKNKELSEKV 320
KGI KP + +++ F +T N D + + EKV
Sbjct: 7 KGIRISKPIVKEISSFGSLT-NIDLHTDPYEKV 38
>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
Pik3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 801
Score = 24.2 bits (50), Expect = 9.8
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = -1
Query: 165 NFCITSFFLLMIKTGFVLFLFSIWLE*SFLEAKID 61
++C T+F L + +L LFS+ ++ + + K D
Sbjct: 714 SYCYTTFTALRKSSNLILNLFSLMVDANIPDIKFD 748
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 24.2 bits (50), Expect = 9.8
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = -3
Query: 319 TFSDSSLFLSAFNVIFLNSL---RSSSVGFFASIPLFLMTYLHQGSTLSNVI*LELLYNF 149
T D+ +F S F V +NS+ R F + F S +S++ L +LYNF
Sbjct: 1302 TIDDNLIFSSVF-VEEINSISKKRLDEPDFERRLSAFTSFNEKHFSLISDLAWLPVLYNF 1360
Query: 148 LFSSNDKDRI 119
F D + +
Sbjct: 1361 FFYVQDAEEL 1370
>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 581
Score = 24.2 bits (50), Expect = 9.8
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Frame = -3
Query: 364 MASTSKLVMSPWN-IDTFSDSSLFLSAFNVIFLNSLRSSSVG--FFASIPLFLMTYLHQG 194
+AS L M PWN + + ++ + +LS+++V FL+S + +F L + L+
Sbjct: 387 IASIIALCMCPWNLLSSNNNFTTYLSSYSV-FLSSFAGVIIADYYFVRKGLIRVAPLYSS 445
Query: 193 STLS 182
S+ S
Sbjct: 446 SSSS 449
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 24.2 bits (50), Expect = 9.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 270 KKITLNADKNKELSEKVSIFQGDITNLEVDA 362
+K++L + +NK+LS KVS + L A
Sbjct: 1217 EKLSLASSENKDLSNKVSSLTKQVNELSPKA 1247
>SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 340
Score = 24.2 bits (50), Expect = 9.8
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +3
Query: 69 SLLKMTTQAKWKTEKERILSLSLEEKRKLYKSSNYITLDNVDPWCKYVIKNK 224
S+L + A + K I++LS + +K +D+V P+C YVI N+
Sbjct: 170 SMLCLAQHAN-ENNKPYIMNLSAPFLSQFFKEQ----MDSVIPYCDYVIGNE 216
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1385
Score = 24.2 bits (50), Expect = 9.8
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -3
Query: 271 LNSLRSSSVGFFASIPLFLMTYLHQGSTLSNVI*LELLYNFLFSSNDKDRI 119
L SL+ S FF IPL + + + + + L+ + F + KDRI
Sbjct: 967 LASLKQISAAFFTRIPLKIKDFKKEINAFNEKGSLDFQFGRGFVLSSKDRI 1017
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,902,061
Number of Sequences: 5004
Number of extensions: 37922
Number of successful extensions: 155
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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