Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S13A01NGRL0001_B10
(462 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0359 - 2805094-2805175,2805256-2805347,2805443-2805517,280... 41 6e-04
03_02_0926 + 12448032-12448231,12448727-12448815,12449956-124500... 40 7e-04
03_02_0651 + 10183050-10184167,10184350-10184974,10185023-101852... 38 0.004
10_08_0180 + 15502809-15503312,15503399-15503454,15503934-155040... 30 1.0
06_03_0087 + 16465947-16466315 29 2.4
09_06_0242 - 21806370-21806483,21806574-21806660,21806865-218069... 28 3.2
03_01_0009 - 89127-89924,90090-90518,90582-90716,91102-91382,916... 28 4.2
01_07_0039 - 40667598-40669880 28 4.2
09_02_0340 + 7456343-7456552,7456910-7456931,7457274-7457335,745... 27 5.6
07_01_0862 - 7172083-7172931 27 5.6
06_03_0247 + 18679278-18679319,18679522-18679620,18679897-186801... 27 7.3
05_05_0165 + 22851863-22852566,22852811-22852964,22853112-228532... 27 7.3
09_04_0723 + 19736958-19737107,19737979-19738480,19738911-197390... 27 9.7
05_01_0192 + 1394342-1396645 27 9.7
>03_01_0359 -
2805094-2805175,2805256-2805347,2805443-2805517,
2805582-2805675,2805769-2805872,2806777-2806885,
2807397-2807609,2808170-2808289,2809060-2809115,
2809210-2809287,2809374-2809733
Length = 460
Score = 40.7 bits (91), Expect = 6e-04
Identities = 21/53 (39%), Positives = 32/53 (60%)
Frame = +3
Query: 303 ELSEKVSIFQGDITNLEVDAIVNAANSHLKAGGGVDGAIHRAAGSLLQDEGNT 461
E++ K+ +++G NLEVDA+VN+ N +L G +H AAG L +E T
Sbjct: 94 EINSKICLWRGHPWNLEVDAVVNSTNENLDEAHSSPG-LHAAAGPGLAEECTT 145
>03_02_0926 +
12448032-12448231,12448727-12448815,12449956-12450096,
12450181-12450283,12450386-12450481,12450580-12450654,
12450754-12450823,12451028-12451111
Length = 285
Score = 40.3 bits (90), Expect = 7e-04
Identities = 20/42 (47%), Positives = 27/42 (64%)
Frame = +3
Query: 309 SEKVSIFQGDITNLEVDAIVNAANSHLKAGGGVDGAIHRAAG 434
S+ +S+ +T + + VNAAN + GGGVDGAIHR AG
Sbjct: 110 SDYLSMTMKKMTVIHISQ-VNAANERMLGGGGVDGAIHRTAG 150
>03_02_0651 +
10183050-10184167,10184350-10184974,10185023-10185208,
10185325-10185660
Length = 754
Score = 37.9 bits (84), Expect = 0.004
Identities = 27/60 (45%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Frame = +3
Query: 288 ADKNKELSEKVSIFQGDITNLE------VDAIVNAANSHLK-AGGGVDGAIHRAAGSLLQ 446
A K S + F GDIT L+ + I NAAN LK GGGV+ AI+ AAG LQ
Sbjct: 336 AAKKNINSSRFFTFVGDITQLQSKGGLRCNVIANAANWRLKPGGGGVNAAIYNAAGEDLQ 395
>10_08_0180 +
15502809-15503312,15503399-15503454,15503934-15504053,
15504190-15504260,15504603-15504696,15504772-15504978,
15505406-15505657,15505781-15505889,15506112-15506179,
15506278-15506347,15506429-15506503,15506600-15506691,
15506779-15506860
Length = 599
Score = 29.9 bits (64), Expect = 1.0
Identities = 11/26 (42%), Positives = 20/26 (76%)
Frame = +3
Query: 303 ELSEKVSIFQGDITNLEVDAIVNAAN 380
E++ ++ +++G NLEVDA+VN+ N
Sbjct: 88 EINSRIYLWRGHPWNLEVDAVVNSTN 113
>06_03_0087 + 16465947-16466315
Length = 122
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 62 SIFASKNDYSSQMENRKRTNPVFIIRRKKEVIQK 163
S F S ++ + E ++ N VF+ RKKE+I+K
Sbjct: 49 SQFKSLEVFAWKKERKESKNDVFVANRKKELIEK 82
>09_06_0242 -
21806370-21806483,21806574-21806660,21806865-21806917,
21806999-21807140,21807406-21807501,21808617-21808785,
21808859-21808939,21809032-21809106,21810322-21810387,
21811013-21811158,21811898-21812344
Length = 491
Score = 28.3 bits (60), Expect = 3.2
Identities = 19/52 (36%), Positives = 24/52 (46%)
Frame = -3
Query: 376 AAFTMASTSKLVMSPWNIDTFSDSSLFLSAFNVIFLNSLRSSSVGFFASIPL 221
A F M S+ L + PW I F S L LS+F + L +ASI L
Sbjct: 374 ATFMMLSSVDLGVPPWEIVAFLTSGLALSSFALSGLYCTHQDISREYASILL 425
>03_01_0009 -
89127-89924,90090-90518,90582-90716,91102-91382,
91634-91809,91899-92011,92157-92278,92375-92594
Length = 757
Score = 27.9 bits (59), Expect = 4.2
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Frame = +3
Query: 273 KITLNADKNKELSEKVSIFQGD----ITNLEVDAIVNAANSHLKAGGGVDGAIHR 425
K + +ADK L EK+ + QG+ T E+D ++ +LK G G +G +++
Sbjct: 412 KASRDADKKLRL-EKLFVLQGNSYSTFTWEEIDNATSSFADNLKIGSGANGTVYK 465
>01_07_0039 - 40667598-40669880
Length = 760
Score = 27.9 bits (59), Expect = 4.2
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Frame = +3
Query: 177 TLDNVDPWCKYVIKNKGI-EAKKPTLDDLN-EFKKI-TLNADKN--KELSEKVSIF--QG 335
T+ NV+ WC+ +++ KGI A + T D N E ++ +L AD N +S V + Q
Sbjct: 136 TVANVELWCEDILQTKGICAADRSTHDYPNAELGRLSSLEADCNAVAGISNNVPSYAQQT 195
Query: 336 DITNLEVDAIVNAANS 383
D + L+V N A+S
Sbjct: 196 DRSCLDVGDCSNVASS 211
>09_02_0340 +
7456343-7456552,7456910-7456931,7457274-7457335,
7457594-7457647
Length = 115
Score = 27.5 bits (58), Expect = 5.6
Identities = 12/49 (24%), Positives = 27/49 (55%)
Frame = -3
Query: 454 PSSCSRDPAARCIAPSTPPPAFR*ELAAFTMASTSKLVMSPWNIDTFSD 308
PS+ + R +P++PP F +++ +S++K ++P ++D D
Sbjct: 9 PSTTPGSASTRWYSPNSPPLGFTRRISSTPGSSSTKAKVTPADVDVDDD 57
>07_01_0862 - 7172083-7172931
Length = 282
Score = 27.5 bits (58), Expect = 5.6
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3
Query: 454 PSSCSRDPAARCIAPSTPPP 395
P + P+ RC+AP+ PPP
Sbjct: 111 PGAALNLPSRRCVAPAPPPP 130
>06_03_0247 +
18679278-18679319,18679522-18679620,18679897-18680100,
18680334-18680431,18680554-18680641,18680728-18681078,
18682093-18682623
Length = 470
Score = 27.1 bits (57), Expect = 7.3
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +3
Query: 141 EKRKLYKSSNYITLDNVDPWCKYVIKNKG--IEAKKPT 248
E+ KL KSSN I + +DP YV+ G IE +K T
Sbjct: 362 EEAKLQKSSNDIPNNLIDPQKNYVVSAFGHPIENEKQT 399
>05_05_0165 +
22851863-22852566,22852811-22852964,22853112-22853261,
22853769-22853930,22854070-22854242,22854330-22854396,
22854556-22854722,22855216-22855374,22856187-22856276,
22856392-22856483,22856587-22856681,22857328-22857405,
22858364-22858459,22859132-22859206,22859290-22859381,
22859462-22859624,22859734-22859794,22860016-22860116,
22860567-22860614
Length = 908
Score = 27.1 bits (57), Expect = 7.3
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +3
Query: 219 NKGIEAKKPTLDDLNEFKKITLNADKNKELSEKVSIFQ 332
+KGIE++ T NE KK+T +A K K SE S+ Q
Sbjct: 635 SKGIESELDTFIVYNERKKVTSSA-KRKLKSEDKSLHQ 671
>09_04_0723 +
19736958-19737107,19737979-19738480,19738911-19739061,
19739659-19739766,19739789-19739818,19739894-19740303,
19740797-19740882,19740989-19741058,19741413-19741585,
19741644-19741725,19742131-19742288
Length = 639
Score = 26.6 bits (56), Expect = 9.7
Identities = 24/85 (28%), Positives = 35/85 (41%)
Frame = +3
Query: 57 NCLFSLLKMTTQAKWKTEKERILSLSLEEKRKLYKSSNYITLDNVDPWCKYVIKNKGIEA 236
+CL S L M K + LS+ EE R+ KSS++ +D +Y IK +
Sbjct: 300 DCLHSYLCMKEVCCRKWHFDSSLSMPKEETRRNGKSSSHSEIDENSKEQEYNIKGSTQKK 359
Query: 237 KKPTLDDLNEFKKITLNADKNKELS 311
K + L K +NK S
Sbjct: 360 IKRDIKVLGSSDKNYSCTSRNKRSS 384
>05_01_0192 + 1394342-1396645
Length = 767
Score = 26.6 bits (56), Expect = 9.7
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -3
Query: 451 SSCSRDPAARCIAPSTPPPAFR*ELAAFTMASTSKLVMSP 332
SS P+ R PS+PPP AA AS + ++ SP
Sbjct: 251 SSSPSKPSPRMATPSSPPPEAPVSSAAPPPASLNPMLPSP 290
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,443,555
Number of Sequences: 37544
Number of extensions: 213609
Number of successful extensions: 856
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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