Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S13A01NGRL0001_B06
         (571 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0084 - 17788077-17789240                                         31   0.49 
02_05_0471 - 29306334-29306398,29306579-29306775,29307744-29309665     31   0.49 

>05_04_0084 - 17788077-17789240
          Length = 387

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -1

Query: 379 ACGRAIDAYLHVSAACGGSEATHV-YDATLKFSPIQKSLNALTPMRPYVLSISK 221
           A  +A D  L  SA CGG+    + +DA ++  P +  L+A    RP+   +SK
Sbjct: 18  ASAKAADDLLAASAGCGGAHGHSLFFDALVQLIPPRFYLSAADEHRPWYQGLSK 71


>02_05_0471 - 29306334-29306398,29306579-29306775,29307744-29309665
          Length = 727

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = +3

Query: 228 IDNT*GLIGVNALSDFWMGENFKVASYTCVASDPPHAADTCKYASIARPHAMATNLLCPQ 407
           + +T G++G  ALS  W     ++   T    D P   +TC+Y  +A  H  A  L   Q
Sbjct: 298 LGDTYGMLGQTALSLQWYAAGLEIQKQTLGEQD-PRVGETCRY--LAEAHVQALQLDEAQ 354

Query: 408 R 410
           R
Sbjct: 355 R 355


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,108,861
Number of Sequences: 37544
Number of extensions: 260756
Number of successful extensions: 553
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)