Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S13A01NGRL0001_B04
(540 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 28 1.0
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc... 27 1.3
SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces ... 27 1.8
SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual 26 3.1
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual 26 4.1
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 25 5.4
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 25 5.4
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 25 5.4
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 25 5.4
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc... 25 7.2
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 25 7.2
SPBC1347.09 |||hexaprenyldihydroxybenzoate methyltransferase|Sch... 25 9.5
>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 27.9 bits (59), Expect = 1.0
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 84 TAKLAFTANITKNDDRVVYSLLLNEKGGVEADVTISIL 197
T+ +AF +IT++ D +V S L E+G + I IL
Sbjct: 317 TSLIAFNVSITEDADIIVVSTFLTEEGLTDYQRVIKIL 354
>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 364
Score = 27.5 bits (58), Expect = 1.3
Identities = 10/44 (22%), Positives = 25/44 (56%)
Frame = -2
Query: 281 VICTETTSYNVITATLENWFM*LATSTIENTNSHICFYSAFLVQ 150
+IC + +Y + T+E ++ ++E+ N H+CF+ + ++
Sbjct: 320 LICYKDAAYQKLKLTIEE-----SSKSVEHANQHVCFHYDYTLE 358
>SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 461
Score = 27.1 bits (57), Expect = 1.8
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 137 YDPVIVLS-NVRGEREFRSTFSIWPGQVKLTIIRHIKQSCTVSASQ 3
++ +I+ S N G+R+F F W G V L I R + S+S+
Sbjct: 223 FEGIIMNSMNAVGDRDFVIEFMFWAGMVMLHISRFAEDLIIYSSSE 268
>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 26.2 bits (55), Expect = 3.1
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 285 LAHLRRIIQLYKLRATITDVTKQLCILSVQGPNSQRILQRY 407
LA L + I+ K A + D+TKQ+C+ +Q RY
Sbjct: 39 LAKLTKSIKAIKQCAPLNDLTKQVCVELMQCNKKHLEASRY 79
>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1097
Score = 25.8 bits (54), Expect = 4.1
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 476 RFRNSNTAMGINWECVIGQARIRV 405
+F+N + A + WEC RIR+
Sbjct: 570 KFKNGSIAESVYWECSSPDERIRI 593
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +3
Query: 303 IIQLYKLRATITDVTKQLCIL 365
+++L ++R+ I D+T Q CIL
Sbjct: 1214 VLKLTEVRSFIVDITTQFCIL 1234
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 349 NSFASSVFRDLIAKESFNVTRMRACPMTHSQLIPIAVFE 465
+SFAS F ++ S N++ + + P T PI VF+
Sbjct: 717 SSFASLDFNASASQPSNNLSLLSSIPSTSKSYPPIVVFD 755
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 305 YTTKMCQSVICTETTSYNVITATLEN 228
Y K+ QSV+ T +NV T T +N
Sbjct: 39 YKLKLNQSVVTIPTVGFNVETVTYKN 64
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -3
Query: 238 PLKIGSCNWPLPPSRILIVTSASTPPFSFRSKEYTT 131
P I S + + P++ VTS F+F SKEY +
Sbjct: 44 PSSIESVSTLIQPNKSQSVTSPYVKQFTFSSKEYNS 79
>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 536
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -3
Query: 460 ILRWVLTGNASLDRPAF 410
+LRWVL +A+L +PA+
Sbjct: 414 LLRWVLVTSANLSKPAW 430
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 25.0 bits (52), Expect = 7.2
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +1
Query: 373 RDLIAKESFNVTRM--RACPMTHSQLIPIAVFEFRKRPTRQRIKFT 504
+++I + +F V R+ + P AV EFR++P + K+T
Sbjct: 354 QEVIGRGAFGVVRIAHKVDPQNSGSETLYAVKEFRRKPAESQKKYT 399
>SPBC1347.09 |||hexaprenyldihydroxybenzoate
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 284
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = -2
Query: 431 VIGQARIRVTLKDSLAIRSLNTEDAKLFRDISNG 330
VIG+A+ V + ++ RS ++DAK D++NG
Sbjct: 234 VIGKAQANVWVDEAKYQRSTQSKDAKTL-DLANG 266
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,167,094
Number of Sequences: 5004
Number of extensions: 42561
Number of successful extensions: 106
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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