Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S13A01NGRL0001_B04
         (540 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.5  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   4.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   4.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   4.6  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   8.1  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 21/102 (20%), Positives = 41/102 (40%)
 Frame = +3

Query: 234  KGRGYYVVTSGFSANHTLAHLRRIIQLYKLRATITDVTKQLCILSVQGPNSQRILQRYTN 413
            K R ++     F +NH + +LR +      R  I D    L +   +GP    +    TN
Sbjct: 1030 KSRLFHYSVVPFVSNHDILNLRPLSMEKGTRPMIPDDNTSLALPKNEGPFRLNVETAKTN 1089

Query: 414  AGLSNDAFPVNTHRSIRVSKAPYSSENKVYTCRALRVSWSGE 539
              +      ++T +       P++ +N+ Y    + ++  GE
Sbjct: 1090 EEMWE---LIDTEKLTDRLPYPWTMDNERYVKVDMYMNLEGE 1128


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 117 KNDDRVVYSLLLNEKGGVEADVTISILDGGSGQLHE 224
           K D   V    L+E+G    D+ +   DGG  +++E
Sbjct: 587 KGDVAFVPLTALSEEGVQSKDLALICPDGGRAEINE 622


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 117 KNDDRVVYSLLLNEKGGVEADVTISILDGGSGQLHE 224
           K D   V    L+E+G    D+ +   DGG  +++E
Sbjct: 587 KGDVAFVPLTALSEEGVQSKDLALICPDGGRAEINE 622


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 117 KNDDRVVYSLLLNEKGGVEADVTISILDGGSGQLHE 224
           K D   V    L+E+G    D+ +   DGG  +++E
Sbjct: 587 KGDVAFVPLTALSEEGVQSKDLALICPDGGRAEINE 622


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 461 NTAMGINWECVIGQARIRVTLKDS 390
           NT + I+  CVI  A   +  KDS
Sbjct: 243 NTLLSISASCVIAFATSALVSKDS 266


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,001
Number of Sequences: 438
Number of extensions: 2971
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)