Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S13A01NGRL0001_B03
         (402 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical pr...   240   2e-64
Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical pr...    31   0.41 
AL021474-2|CAA16309.3|  655|Caenorhabditis elegans Hypothetical ...    28   2.2  
AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like pro...    28   2.2  
Z66515-10|CAI70410.1|  510|Caenorhabditis elegans Hypothetical p...    28   2.9  
Z66515-9|CAA91346.1|  519|Caenorhabditis elegans Hypothetical pr...    28   2.9  
Z81466-2|CAC42256.1|  954|Caenorhabditis elegans Hypothetical pr...    27   3.8  
Z81466-1|CAB03869.1|  982|Caenorhabditis elegans Hypothetical pr...    27   3.8  
AJ133374-1|CAB40208.1|  954|Caenorhabditis elegans lin-10 protei...    27   3.8  
Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical p...    27   5.0  
Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical pr...    27   5.0  
X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.     27   5.0  
Z82084-4|CAB04980.1|  667|Caenorhabditis elegans Hypothetical pr...    26   8.8  
Z69790-4|CAA93655.1|  282|Caenorhabditis elegans Hypothetical pr...    26   8.8  

>Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical
           protein F10B5.1 protein.
          Length = 214

 Score =  240 bits (588), Expect = 2e-64
 Identities = 107/128 (83%), Positives = 114/128 (89%)
 Frame = +3

Query: 18  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 197
           MGRRPARCYRY KNKPYPKSRFCRGVPD KIRIFDLG KRA VD FP CVH++S+E E L
Sbjct: 1   MGRRPARCYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFPACVHMMSNEREHL 60

Query: 198 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 377
           SSEALEA RIC NKY+VKNCGKD FH+R+R HPFHV RINKMLSCAGADRLQTGMRGA+G
Sbjct: 61  SSEALEAARICANKYMVKNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYG 120

Query: 378 KPQGTVAR 401
           KPQG VAR
Sbjct: 121 KPQGLVAR 128


>Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical
           protein C09G5.2 protein.
          Length = 476

 Score = 30.7 bits (66), Expect = 0.41
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -3

Query: 382 GFPNAPRIPVWSLSAPA 332
           GFPN+P +P+W LS P+
Sbjct: 232 GFPNSPLLPIWLLSYPS 248


>AL021474-2|CAA16309.3|  655|Caenorhabditis elegans Hypothetical
           protein Y32F6A.3 protein.
          Length = 655

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 5/37 (13%)
 Frame = +1

Query: 205 RRWKQAVSVATSTS-----*RTAVKISSTSG*DYTPS 300
           RRWK+ V +AT+TS      R+ V+ +STS    TP+
Sbjct: 504 RRWKKVVPIATNTSVSSSTPRSVVRTTSTSSVPTTPT 540


>AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like
           protein 2 protein.
          Length = 205

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +3

Query: 78  RFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGR 224
           R C  +   K  I D  K+ A ++     + +++ EYEQ++S   +AG+
Sbjct: 93  RACDFMSQLKTDISDADKQLAQLNAQAAALEMIASEYEQMASSVPDAGQ 141


>Z66515-10|CAI70410.1|  510|Caenorhabditis elegans Hypothetical
           protein R53.1b protein.
          Length = 510

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -2

Query: 395 YCALGFPERTT-HPSLEPISSSARQHFIDA 309
           Y +LG  + T  HP+L  +SS  R+H++ A
Sbjct: 465 YTSLGGRDNTVKHPALRIVSSDGREHYLPA 494


>Z66515-9|CAA91346.1|  519|Caenorhabditis elegans Hypothetical
           protein R53.1a protein.
          Length = 519

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -2

Query: 395 YCALGFPERTT-HPSLEPISSSARQHFIDA 309
           Y +LG  + T  HP+L  +SS  R+H++ A
Sbjct: 474 YTSLGGRDNTVKHPALRIVSSDGREHYLPA 503


>Z81466-2|CAC42256.1|  954|Caenorhabditis elegans Hypothetical
           protein C09H6.2b protein.
          Length = 954

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -1

Query: 96  AHPDKTEI*DTVYSYNIDNISLVGAPLCSPQS 1
           AH +K  I D +   NI+ ISLVG PL + Q+
Sbjct: 812 AHSNKLNIGDQII--NINGISLVGLPLSAAQT 841


>Z81466-1|CAB03869.1|  982|Caenorhabditis elegans Hypothetical
           protein C09H6.2a protein.
          Length = 982

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -1

Query: 96  AHPDKTEI*DTVYSYNIDNISLVGAPLCSPQS 1
           AH +K  I D +   NI+ ISLVG PL + Q+
Sbjct: 840 AHSNKLNIGDQII--NINGISLVGLPLSAAQT 869


>AJ133374-1|CAB40208.1|  954|Caenorhabditis elegans lin-10 protein
           protein.
          Length = 954

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -1

Query: 96  AHPDKTEI*DTVYSYNIDNISLVGAPLCSPQS 1
           AH +K  I D +   NI+ ISLVG PL + Q+
Sbjct: 812 AHSNKLNIGDQII--NINGISLVGLPLSAAQT 841


>Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical
           protein R06C7.10 protein.
          Length = 1938

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -2

Query: 398 RYCALGFPERTTHPS-LEPISSSARQHFIDADDME 297
           R C  GFP RT HP  ++  +  A +    +DDM+
Sbjct: 708 RICRKGFPNRTQHPDFVQRYAILAAKEAKSSDDMK 742


>Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical
           protein R06C7.10 protein.
          Length = 1938

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -2

Query: 398 RYCALGFPERTTHPS-LEPISSSARQHFIDADDME 297
           R C  GFP RT HP  ++  +  A +    +DDM+
Sbjct: 708 RICRKGFPNRTQHPDFVQRYAILAAKEAKSSDDMK 742


>X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.
          Length = 1938

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -2

Query: 398 RYCALGFPERTTHPS-LEPISSSARQHFIDADDME 297
           R C  GFP RT HP  ++  +  A +    +DDM+
Sbjct: 708 RICRKGFPNRTQHPDFVQRYAILAAKEAKSSDDMK 742


>Z82084-4|CAB04980.1|  667|Caenorhabditis elegans Hypothetical
           protein ZK1053.4 protein.
          Length = 667

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
 Frame = -1

Query: 225 YGLLPAPQNSA--ARTHQTLSARIVGSHPLSLSFCPSRKYGSLGQAHPDKTEI*DTVYSY 52
           Y L P PQ S     +H     +   S  LS  +CPSR   +     P       TV++Y
Sbjct: 233 YSLYPPPQPSQQFVHSHNFHQPKFDASSMLSTGYCPSRNVATFKVDKPY-----GTVFTY 287

Query: 51  NIDN 40
           +  N
Sbjct: 288 DHQN 291


>Z69790-4|CAA93655.1|  282|Caenorhabditis elegans Hypothetical
           protein F33C8.3 protein.
          Length = 282

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -1

Query: 303 HGRGVVSSGCGTDLYRSSLRGTCCNRYGLLPAPQN 199
           HG G      GT   R  +  +CCN +G L  P N
Sbjct: 183 HGIGAFGGNKGTGYGR--VPSSCCNEHGKLSYPNN 215


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,313,105
Number of Sequences: 27780
Number of extensions: 215046
Number of successful extensions: 580
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)