Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S13A01NGRL0001_B02
         (518 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   1.1  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   3.3  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   5.7  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    21   7.6  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 83  PFNSIHALSAASGSSKATKPKP 18
           P +S   LSAA+ SS +T P+P
Sbjct: 823 PASSPRYLSAAATSSTSTSPRP 844


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 178 LIAQIFVLILFDALLFSGLV 119
           L+A +++L  F ALL +GLV
Sbjct: 50  LLALLYILFTFLALLGNGLV 69


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 154 ILFDALLFSGLVQHTRVFL 98
           +LF  L F+GL  HT ++L
Sbjct: 247 MLFRKLPFAGLHSHTIIYL 265


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 85  KELVEGKPLYVGRAQKKAERQKELKRKFEQ 174
           K LVE KP        K +  K+ + KFE+
Sbjct: 92  KFLVENKPELWDSLANKYDPDKKFRVKFEE 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,714
Number of Sequences: 438
Number of extensions: 2254
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)