Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S13A01NGRL0001_B01
         (359 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc...    87   6e-19
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    27   0.67 
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar...    27   1.2  
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c...    26   1.5  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    25   3.5  
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ...    25   3.5  

>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
           scaffold protein Isu1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 192

 Score = 87.4 bits (207), Expect = 6e-19
 Identities = 38/57 (66%), Positives = 46/57 (80%)
 Frame = +3

Query: 174 YHANVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDDNGKIIDAKFQ 344
           YH NV+DHY NPRNVG+L K D +VG GLVGAPACGDVM+L I+V+ +G I D KF+
Sbjct: 54  YHKNVLDHYNNPRNVGTLPKGDPDVGIGLVGAPACGDVMRLAIRVNKDGVIEDVKFK 110


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 27.5 bits (58), Expect = 0.67
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +3

Query: 114 IRRCICLKSFSSPTVIQTSSYHANVIDHYENPRNVGSLDKKDKNVGTGLV 263
           + RCI + + S+PT+++   YH   IDH   P   G   +  K +G  L+
Sbjct: 429 VARCISVMNRSNPTLLEFMQYH---IDHC--PAEKGETYQLAKTLGQQLI 473


>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 282 DVMKLQIKVDDNGKIIDAKF 341
           DVMK+ I V  NG+I+D+ F
Sbjct: 194 DVMKVDIGVHVNGRIVDSAF 213


>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 8/16 (50%), Positives = 16/16 (100%)
 Frame = +3

Query: 282 DVMKLQIKVDDNGKII 329
           DV++LQ+++DD+GK++
Sbjct: 87  DVVQLQVELDDSGKVL 102


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 310 STLI*SFMTSPQAGAPTNPVPTFLSFLSKE 221
           STL  S +T PQ G  TN +P+    L+ E
Sbjct: 20  STLNGSAVTDPQFGNTTNSLPSMNGLLNHE 49


>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = -2

Query: 133 KQIHLRIFCKNAIMSVR*TTMCKLYFRIVTSV 38
           K+I  R F   AIMS    T C  YF   T V
Sbjct: 260 KEIRYRTFLGMAIMSFNQLTGCNYYFYYGTQV 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,444,483
Number of Sequences: 5004
Number of extensions: 28074
Number of successful extensions: 69
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)