Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S13A01NGRL0001_B01
         (359 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    23   1.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   1.5  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   3.3  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   3.3  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    21   3.3  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    21   3.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   3.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   3.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   5.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   5.9  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   5.9  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    20   7.7  

>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +3

Query: 129 CLKSFSSPTVIQTSSYHANVIDHY 200
           C      P +IQ      NVIDHY
Sbjct: 14  CHSIIQIPVIIQLPFCGPNVIDHY 37


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 280 PQAGAPTNPVPTFLSFLSKEPTL 212
           P AGAP  P+P  +S +S  P L
Sbjct: 411 PSAGAPMPPIPN-MSNMSGMPPL 432



 Score = 20.2 bits (40), Expect = 7.7
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +3

Query: 201 ENPRNVGSLDKKDKNVGTGLVGAPAC 278
           E P +V S DK     G G+   P C
Sbjct: 263 EKPLDVSSNDKVHPLYGHGVCKWPGC 288


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 6/29 (20%), Positives = 16/29 (55%)
 Frame = +1

Query: 196 IMKIPVMWVLWTKKIRMLALDWLGHPLVV 282
           + + P+++  WT  +  + L W   P+++
Sbjct: 153 VQECPLIFESWTHNVLDMVLYWDQEPIIL 181


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 223 LWTKKIRMLALDWLG 267
           +W +KI   A+ WLG
Sbjct: 365 IWQEKIVFAAVTWLG 379



 Score = 20.2 bits (40), Expect = 7.7
 Identities = 10/47 (21%), Positives = 22/47 (46%)
 Frame = -1

Query: 332 INYFSIIIYFNLKLHDITTSGCPNQSSANILIFFVQRTHITGIFIMV 192
           I++ +I+ +  ++  ++    CP       LIF    +    +F+MV
Sbjct: 177 ISFPAIVWWRAVRTEEVPEDKCPFTEHLGYLIFSSTISFYLPLFVMV 223


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 7/30 (23%), Positives = 16/30 (53%)
 Frame = +1

Query: 169 RLIMLTSSTIMKIPVMWVLWTKKIRMLALD 258
           + IM+ +  +    ++W  + K  RM+ L+
Sbjct: 73  KCIMIATKAMKNDVILWDFFVKNARMILLE 102


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 7/30 (23%), Positives = 16/30 (53%)
 Frame = +1

Query: 169 RLIMLTSSTIMKIPVMWVLWTKKIRMLALD 258
           + IM+ +  +    ++W  + K  RM+ L+
Sbjct: 47  KCIMIATKAMKNDVILWDFFVKNARMILLE 76


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = +3

Query: 144  SSPTVIQTSSYHANVIDHYENPRNVGS 224
            S+P +  TSS  ++++ H+++  N G+
Sbjct: 1406 SAPVLYVTSSTSSSILLHWKSGHNGGA 1432


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = +3

Query: 144  SSPTVIQTSSYHANVIDHYENPRNVGS 224
            S+P +  TSS  ++++ H+++  N G+
Sbjct: 1402 SAPVLYVTSSTSSSILLHWKSGHNGGA 1428


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -2

Query: 286 TSPQAGAPTNPVPTFLSFLSKEPTLR 209
           TSP    P NPV   L  L  EP +R
Sbjct: 16  TSPLPRKPVNPVQE-LKALFAEPPVR 40


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 282 DVMKLQIKVDDNGKIID 332
           D+M+L I++DD   I+D
Sbjct: 336 DMMQLPIQLDDGIDILD 352


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 309 DDNGKIIDAKFQNIWL 356
           DD G  I  K+ N WL
Sbjct: 157 DDKGNPIKDKYPNNWL 172


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 300 IKVDDNGKIIDAKFQNIW 353
           +K DDN + I  K+Q I+
Sbjct: 106 VKNDDNFRNISEKYQEIF 123


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,318
Number of Sequences: 438
Number of extensions: 1937
Number of successful extensions: 15
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8432340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)