Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S13A01NGRL0001_A24
         (288 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    25   1.7  
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom...    25   1.7  
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    24   3.8  
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |...    23   6.7  
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    23   6.7  
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac...    23   8.8  
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch...    23   8.8  

>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +2

Query: 17  VRKDLEVVISDLDNVRKDLVAVIRDTDMAREDLEAVIRDSGRVKEDSKTVT 169
           +R D+EVV+ DL+   +D        + A ++ +    DS R   D K VT
Sbjct: 270 LRGDVEVVVGDLERDGRDTSLGDASVNEAAKETDV---DSSRFISDEKAVT 317


>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 326

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -3

Query: 151 LLDPARIPDYRLQILPGHVRIPDYRHQILPDIVQITDYHLQILPDP 14
           L DP +I +      P H+  P  R+  LP    + DY+  I+  P
Sbjct: 5   LKDPVKIFEINKGKRPVHIAAPMVRYSKLPFRQLVRDYNTDIVYTP 50


>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 61  DIVQITDYHLQILP 20
           D++ + DYHL +LP
Sbjct: 152 DLIWVQDYHLMVLP 165


>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 661

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 12/44 (27%), Positives = 18/44 (40%)
 Frame = +2

Query: 149 EDSKTVTNVRXXXXXXXXXXXXXXNTEDTKHADTKY*YNVKIIT 280
           EDS T T++                ++DTK    KY  N+  +T
Sbjct: 38  EDSDTNTSITQSPTNSEKLTDILQESQDTKALQEKYLQNIYALT 81


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 101 AREDLEAVIRDSGRVKEDSKTV 166
           AREDL A+ RD   V +DS  V
Sbjct: 421 AREDLAALERDYEEVGQDSMEV 442


>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
           Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 177

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 148 LDPARIPDYRLQILPGHVRIPDYRHQILPDIVQITDYHLQILPD 17
           + PA+I   R+Q     + IP       PD +++   HL+I PD
Sbjct: 21  ISPAQI---RIQKDVTDLEIPSTMSTSWPDPIKLNVLHLEIRPD 61


>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 97  VRIPDYRHQILPDIVQITD 41
           V  P + HQ++P+IV I +
Sbjct: 558 VESPRFHHQLMPNIVYIDE 576


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 732,873
Number of Sequences: 5004
Number of extensions: 10709
Number of successful extensions: 45
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 67723590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)