Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S13A01NGRL0001_A24
(288 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0249 + 1850443-1851030 29 0.60
01_01_0772 - 5999333-5999881,6001105-6001315,6001791-6001858 28 1.4
11_01_0250 + 1924261-1924848 27 1.8
04_01_0281 + 3760014-3760027,3760138-3761071 27 3.2
08_01_0694 - 6136025-6136749,6137425-6137971 26 5.6
04_01_0277 + 3681869-3681922,3681946-3682004,3683011-3683631,368... 26 5.6
08_02_1200 + 25234208-25234370,25238527-25238819,25240003-252402... 25 7.4
05_06_0003 + 24797098-24797223,24797981-24798193,24798289-247984... 25 7.4
04_01_0289 + 3830052-3831134,3831141-3831230,3831494-3831525,383... 25 7.4
11_06_0551 + 24903208-24903399,24903513-24904661,24904686-24907502 25 9.8
11_06_0541 + 24771145-24775479 25 9.8
07_03_1157 - 24419157-24419948 25 9.8
07_01_0885 + 7353926-7354770,7354845-7355487 25 9.8
04_04_0466 + 25433678-25434007,25434118-25434176,25434345-254344... 25 9.8
>12_01_0249 + 1850443-1851030
Length = 195
Score = 29.1 bits (62), Expect = 0.60
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Frame = +2
Query: 20 RKDLEVVISDLDNVRKDLVAVIRDTDMA----REDLEAVIRDSGRVKE 151
R+DLEV + + + +++L A++ + D A E++ A D G +KE
Sbjct: 84 REDLEVALRRIVSSKEELAAMLAEADYAGELVLEEIAAAAADEGELKE 131
>01_01_0772 - 5999333-5999881,6001105-6001315,6001791-6001858
Length = 275
Score = 27.9 bits (59), Expect = 1.4
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +2
Query: 17 VRKDLEVVISDLDNVRKDLVAVIRDTDMAREDLEAVIRDSGRVKEDSKTV 166
V +D V D V D V RDT +D V RD+ V +D+ V
Sbjct: 45 VSRDTHEVSCDTCRVSDDFYHVSRDTRKVSDDFYHVSRDTCEVSDDTYQV 94
>11_01_0250 + 1924261-1924848
Length = 195
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Frame = +2
Query: 20 RKDLEVVISDLDNVRKDLVAVIRDTDMA----REDLEAVIRDSGRVKE 151
R+DLEV + + + +++L A++ + + A E++ A D G +KE
Sbjct: 84 REDLEVALRRIVSSKEELAAMLAEAECAGELVLEEIAAAAADEGELKE 131
>04_01_0281 + 3760014-3760027,3760138-3761071
Length = 315
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +2
Query: 20 RKDLEVVISDLDNVRKDLVAVIRDTDMAREDLEAVIRD 133
RK ++ + DL++ RK ++ V+ D + + E I+D
Sbjct: 153 RKQIKAKVEDLEDARKAVLVVMNAADTYQLEAEKKIKD 190
>08_01_0694 - 6136025-6136749,6137425-6137971
Length = 423
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 18 SGRIWRW*SVIWTMSGRIWWR*SGI 92
SG WR S +W++ GR+ W GI
Sbjct: 255 SGSAWR--STLWSIVGRVKWHGIGI 277
>04_01_0277 +
3681869-3681922,3681946-3682004,3683011-3683631,
3683718-3684147
Length = 387
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +2
Query: 20 RKDLEVVISDLDNVRKDLVAVIRDTDMAREDLEAVIRD 133
RK ++ + DL++ RK ++ V+ D + E I+D
Sbjct: 181 RKQIKAKVEDLEDARKAVLVVMNAADTYQHVAEKKIKD 218
>08_02_1200 +
25234208-25234370,25238527-25238819,25240003-25240243,
25240523-25240855,25240940-25241025,25241133-25242575
Length = 852
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 56 NVRKDLVAVIRDTDMAREDLEAV 124
NV+KD A +RD + ARE L +
Sbjct: 341 NVQKDKFAWLRDEEFARETLAGI 363
>05_06_0003 +
24797098-24797223,24797981-24798193,24798289-24798444,
24798555-24798959
Length = 299
Score = 25.4 bits (53), Expect = 7.4
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +2
Query: 50 LDNVRKDLVAVIRDTDMAREDLEAV 124
+D+ KD+ V++ D A+E +EA+
Sbjct: 65 VDSALKDMAVVMKQQDRAKEAIEAI 89
>04_01_0289 +
3830052-3831134,3831141-3831230,3831494-3831525,
3833690-3834623
Length = 712
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = +2
Query: 20 RKDLEVVISDLDNVRKDLVAVIRDTDMAREDLEAVIRD 133
RK ++ ++ DL++ R ++ V+ D + + E I+D
Sbjct: 550 RKQIKTMVEDLEDARMAVLVVMNAADTYQLEAEKKIKD 587
>11_06_0551 + 24903208-24903399,24903513-24904661,24904686-24907502
Length = 1385
Score = 25.0 bits (52), Expect = 9.8
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +2
Query: 8 LVRVRKDLEVVISDLDNVRKDLVAVIRDTDMAREDLEAVIRDSGRVKEDSKTV 166
L ++RK L VVI D DN+ K+L+ I D L I +E + ++
Sbjct: 930 LWQLRK-LGVVIDDKDNLLKNLLTAISDLCECLRSLSITIVPCSTKREGTPSI 981
>11_06_0541 + 24771145-24775479
Length = 1444
Score = 25.0 bits (52), Expect = 9.8
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +2
Query: 8 LVRVRKDLEVVISDLDNVRKDLVAVIRDTDMAREDLEAVIRDSGRVKEDSKTV 166
L ++RK L VVI D DN+ K+L+ I D L I +E + ++
Sbjct: 988 LWQLRK-LGVVIDDKDNLLKNLLTAISDLCECLRSLSITIVPCSTKREGTPSI 1039
>07_03_1157 - 24419157-24419948
Length = 263
Score = 25.0 bits (52), Expect = 9.8
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -3
Query: 142 PARIPDYRLQILPGHVRIPDYRHQILPDI 56
PA +P++ P H +P+ H +P+I
Sbjct: 126 PAVVPEFPKHEEPPHPAVPELPHPAVPEI 154
>07_01_0885 + 7353926-7354770,7354845-7355487
Length = 495
Score = 25.0 bits (52), Expect = 9.8
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = +2
Query: 11 VRVRKDLEVVISDLDNVRKDLVAVIRDTDMARE 109
V R++ V ++DN+R DL+ ++ +T MA++
Sbjct: 265 VTFRENWIDVTVNVDNIRCDLIQLVSETLMAKQ 297
>04_04_0466 +
25433678-25434007,25434118-25434176,25434345-25434426,
25435024-25435122,25435750-25435831,25436759-25436823,
25437241-25438308,25438369-25438446,25438550-25438596,
25438734-25438779,25438871-25438950,25439050-25439166,
25439842-25439923,25440156-25440281,25440415-25440489,
25440743-25440868,25441542-25441646
Length = 888
Score = 25.0 bits (52), Expect = 9.8
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +2
Query: 38 VISDLDNVRKDLVAVIRDTDMAREDLEAVIRDSGRVKEDS 157
V+S +N+ L+ + R ++ +D E+V+ D G KEDS
Sbjct: 481 VLSQTENILGALMLLSRS--LSPQDKESVMVDDGSNKEDS 518
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,593,815
Number of Sequences: 37544
Number of extensions: 70583
Number of successful extensions: 240
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 304131700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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