Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S13A01NGRL0001_A24
         (288 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical ...    30   0.31 
AL021481-2|CAA16334.1|  595|Caenorhabditis elegans Hypothetical ...    29   0.71 
X70832-1|CAA50180.1|  500|Caenorhabditis elegans Cytoplasmic int...    27   1.6  
AF047657-10|AAK18940.2|  500|Caenorhabditis elegans Intermediate...    27   1.6  
AC199160-2|ABO33282.1|  222|Caenorhabditis elegans Hypothetical ...    26   3.8  
L10990-4|ABB88238.1|  438|Caenorhabditis elegans Hypothetical pr...    26   5.0  
L10990-3|ABB88237.1|  505|Caenorhabditis elegans Hypothetical pr...    26   5.0  
AF100673-1|AAP13733.1|  897|Caenorhabditis elegans Hypothetical ...    26   5.0  
AF022974-3|AAC48037.1|  346|Caenorhabditis elegans Seven tm rece...    25   8.7  

>AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical
           protein M01E10.2 protein.
          Length = 1286

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
 Frame = +2

Query: 17  VRKDLEVVISDLDNVRKDLVAVIRDTDMAREDLEAVIRDS-GRVKE-DSKTVT 169
           +RK+LE  +  +D + K+L   I +TD+  EDLE +I +    V++ D +T T
Sbjct: 182 MRKELEEAL--VDELAKNLGETIDNTDITEEDLEKLIEEGFDEVRKIDQETTT 232


>AL021481-2|CAA16334.1|  595|Caenorhabditis elegans Hypothetical
           protein Y43F4B.5a protein.
          Length = 595

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +2

Query: 14  RVRKDLEVVISDLDNVRKDLVAVI 85
           + + DLE VIS++D + KD+VA +
Sbjct: 560 KTQNDLESVISEMDQLEKDVVATL 583


>X70832-1|CAA50180.1|  500|Caenorhabditis elegans Cytoplasmic
           intermediate filament(IF) protein protein.
          Length = 500

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = -3

Query: 118 LQILPGHVRIPDYRHQILPDIVQITDYHLQILPDPDQN 5
           ++++P HV I DYR ++L     ++  H ++     +N
Sbjct: 272 IRVIPAHVHIEDYREELLSIRTTLSTTHSRLAEIESRN 309


>AF047657-10|AAK18940.2|  500|Caenorhabditis elegans Intermediate
           filament, c protein 1 protein.
          Length = 500

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = -3

Query: 118 LQILPGHVRIPDYRHQILPDIVQITDYHLQILPDPDQN 5
           ++++P HV I DYR ++L     ++  H ++     +N
Sbjct: 272 IRVIPAHVHIEDYREELLSIRTTLSTTHSRLAEIESRN 309


>AC199160-2|ABO33282.1|  222|Caenorhabditis elegans Hypothetical
           protein CE7X_3.2 protein.
          Length = 222

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 118 LQILPGHVRIPDYRHQILPDIVQITDYH 35
           LQ +PG  R   + +  LPDI Q+ D +
Sbjct: 153 LQQIPGSTRNAQHENHSLPDIEQVLDVY 180


>L10990-4|ABB88238.1|  438|Caenorhabditis elegans Hypothetical
           protein C30A5.10b protein.
          Length = 438

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 26  DLEVVISDLDNVRKDLVAVIRDTDMAREDLEAVIR 130
           DL  ++S  +  + DL+A+IRD      + E +IR
Sbjct: 248 DLYELLSGTNIQKSDLIAIIRDDSTFMPNTEQIIR 282


>L10990-3|ABB88237.1|  505|Caenorhabditis elegans Hypothetical
           protein C30A5.10a protein.
          Length = 505

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 26  DLEVVISDLDNVRKDLVAVIRDTDMAREDLEAVIR 130
           DL  ++S  +  + DL+A+IRD      + E +IR
Sbjct: 248 DLYELLSGTNIQKSDLIAIIRDDSTFMPNTEQIIR 282


>AF100673-1|AAP13733.1|  897|Caenorhabditis elegans Hypothetical
           protein Y66H1B.2a protein.
          Length = 897

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +2

Query: 47  DLDNVRKDLVAVIRDTDMAREDLEAVIRDSGRVKEDSKTVTNV 175
           D+D   K     +RD     +DLEA++    + KE ++ + N+
Sbjct: 35  DVDKYEKQYKFNVRDLGYQPKDLEAIVMPPTQKKEVAEIIDNL 77


>AF022974-3|AAC48037.1|  346|Caenorhabditis elegans Seven tm
           receptor protein 207 protein.
          Length = 346

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 9/34 (26%)
 Frame = +3

Query: 3   RFWSGSGRIW---------RW*SVIWTMSGRIWW 77
           R+W+ SG IW          W +++  + G IWW
Sbjct: 113 RYWAISGNIWLEKFNGFRILWWALVPVLCGAIWW 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,884,712
Number of Sequences: 27780
Number of extensions: 56002
Number of successful extensions: 191
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 269889950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)