Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S13A01NGRL0001_A23
(248 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyce... 27 0.27
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy... 25 1.1
SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces... 24 2.6
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 24 2.6
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo... 24 2.6
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo... 24 3.4
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 24 3.4
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 23 5.9
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc... 23 5.9
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr... 23 5.9
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 23 5.9
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 23 7.8
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 23 7.8
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 23 7.8
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po... 23 7.8
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual 23 7.8
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 23 7.8
>SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 418
Score = 27.5 bits (58), Expect = 0.27
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -2
Query: 133 HSTLIEQQKSYCEGDTPFHFCPKWKDTRFGTNKIMYNLTKAW 8
H L++ +K+ CEGD P + T+ G + M L W
Sbjct: 249 HECLLKLKKNACEGDLPDYDSDAVPGTKAGPRQDMDTLGALW 290
>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 286
Score = 25.4 bits (53), Expect = 1.1
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +2
Query: 119 YQSTMAYRHHWHDHWGH 169
+ T Y HH HDH GH
Sbjct: 16 HHHTHDYDHHNHDHHGH 32
>SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 300
Score = 24.2 bits (50), Expect = 2.6
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 59 FPFWTKMKWSVTLTVTFLLFYQSTMAYRHHWHDHWG 166
FP TKM W +TL F + T Y H H+G
Sbjct: 129 FPPVTKMIWQITL----FFFLEDTWHYWAHRLFHYG 160
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 24.2 bits (50), Expect = 2.6
Identities = 8/32 (25%), Positives = 17/32 (53%)
Frame = +2
Query: 65 FWTKMKWSVTLTVTFLLFYQSTMAYRHHWHDH 160
+W K+K T T+ + ++ +++ HH H
Sbjct: 138 YWVKLKNRFTETLVYDIYTLCLVSWHHHVFSH 169
>SPBC13A2.03 |||phosphatidate
cytidylyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 439
Score = 24.2 bits (50), Expect = 2.6
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +2
Query: 68 WTK-MKWSVTLTVTFLLFYQSTMAYRHH 148
WT+ + W +T + + +S AY HH
Sbjct: 107 WTRFINWYFLMTTLYYAYGESIYAYFHH 134
>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 432
Score = 23.8 bits (49), Expect = 3.4
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = -1
Query: 245 LKMNHLKMNCLKMNHHCLNCRYCQSHDP 162
LK++ + C++ N L C CQ +P
Sbjct: 20 LKISKFLILCMRRNKRQLACMKCQCENP 47
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 23.8 bits (49), Expect = 3.4
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +1
Query: 73 KNEMECHPHSNFSAVLSEYYGLQTP 147
K++++ HP F A L+EY + P
Sbjct: 122 KDKIDRHPERRFKAALTEYKQSRLP 146
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 23.0 bits (47), Expect = 5.9
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +1
Query: 1 DVSRLLLNYTLFYLYRSECLSILDKNEMECHPHSNFSAVLSEYYG 135
+ + L++ YT+ YL + +D + F +VL EY G
Sbjct: 667 ETALLIIGYTISYLAAQTNSAAVDSFILNSGSIKEFFSVLLEYLG 711
>SPAC22E12.16c |pik1||phosphatidylinositol kinase
Pik1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 23.0 bits (47), Expect = 5.9
Identities = 6/14 (42%), Positives = 11/14 (78%)
Frame = +2
Query: 26 IHYFICTEASVFPF 67
IH+F+C + + FP+
Sbjct: 38 IHHFLCEKLATFPY 51
>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
aminotransferase Eca39|Schizosaccharomyces pombe|chr
2|||Manual
Length = 380
Score = 23.0 bits (47), Expect = 5.9
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = -2
Query: 70 PKWKDTRFGTNKIMYNLTKAW 8
P+WK +FG N + L W
Sbjct: 30 PEWKSLKFGENFTDHMLIMKW 50
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 23.0 bits (47), Expect = 5.9
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3
Query: 15 FVKLYIILFVPKRVSFH 65
F+K+YI F +V FH
Sbjct: 857 FIKMYITSFTKSKVLFH 873
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 22.6 bits (46), Expect = 7.8
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = +2
Query: 68 WTKMKWSVTLTVTFLL 115
W K +WS+ + V F L
Sbjct: 202 WVKSRWSIAVLVFFAL 217
>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 546
Score = 22.6 bits (46), Expect = 7.8
Identities = 7/22 (31%), Positives = 11/22 (50%)
Frame = +2
Query: 65 FWTKMKWSVTLTVTFLLFYQST 130
FW M W+ + V +F+ T
Sbjct: 265 FWINMIWAAAVIVFVFIFFPET 286
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 22.6 bits (46), Expect = 7.8
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -1
Query: 233 HLKMNCLKMNHHCLNCRYCQSHDPS 159
H N ++NHH N SH+PS
Sbjct: 279 HDHENQTQLNHHLDNNSSISSHNPS 303
>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 330
Score = 22.6 bits (46), Expect = 7.8
Identities = 9/31 (29%), Positives = 14/31 (45%)
Frame = -1
Query: 248 RLKMNHLKMNCLKMNHHCLNCRYCQSHDPSD 156
R + L++ C K + Y SH+P D
Sbjct: 224 RARAGQLELRCKKCRFVLASSDYLVSHEPKD 254
>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
Length = 815
Score = 22.6 bits (46), Expect = 7.8
Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = +2
Query: 59 FPFWTKMKWSVTLTVT-FLLFY 121
+P WT KW L V+ ++ FY
Sbjct: 24 YPRWTFNKWKALLPVSAYISFY 45
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 22.6 bits (46), Expect = 7.8
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1
Query: 25 YTLFYLYRSECLS 63
YT+ YLY S CL+
Sbjct: 60 YTVIYLYGSPCLT 72
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 888,273
Number of Sequences: 5004
Number of extensions: 14602
Number of successful extensions: 60
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 45369236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -