Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S13A01NGRL0001_A23
(248 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0793 - 20614583-20614897,20615417-20615660,20617713-206178... 28 1.2
05_03_0467 - 14366969-14367742,14368335-14368754,14370339-143704... 27 1.6
12_02_1228 - 27190983-27191291,27191442-27191675,27191994-271922... 26 4.8
06_01_1145 - 9575173-9575553,9575712-9575858,9575971-9576024,957... 25 6.4
06_01_0303 + 2194345-2194414,2195228-2195328,2195818-2196657,219... 25 6.4
01_06_0932 - 33147656-33148098,33148631-33148675,33148815-331489... 25 6.4
11_01_0494 + 3804913-3805679,3806341-3806530 25 8.5
10_08_0153 - 15240707-15241019,15241269-15241723 25 8.5
09_04_0727 + 19765175-19765384,19765523-19765595,19766476-197665... 25 8.5
07_03_1099 + 23945867-23945872,23945951-23946547,23948928-23949341 25 8.5
07_01_0874 - 7261191-7261274,7262291-7262440,7262769-7262916,726... 25 8.5
>10_08_0793 -
20614583-20614897,20615417-20615660,20617713-20617899,
20618508-20618547,20618699-20618775,20618965-20619091
Length = 329
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 215 LKMNHHCLNCRYCQSHDPSDHASG 144
L+ +HH N YC+ H S HA G
Sbjct: 105 LQDHHHECNGPYCRCHSSSKHAKG 128
>05_03_0467 -
14366969-14367742,14368335-14368754,14370339-14370496,
14370571-14370664,14371536-14371649,14371794-14371985,
14372095-14372176,14372280-14372471,14372773-14373371
Length = 874
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 43 YRSECLSILDKNEMECHPHSNFSAVLSEYYG 135
Y SEC+SI + E C P+ V+ + YG
Sbjct: 506 YISECISIFESMEGHCAPNIGTINVMIKVYG 536
>12_02_1228 -
27190983-27191291,27191442-27191675,27191994-27192269,
27192420-27192696,27192985-27193283,27193341-27193454,
27193909-27194118,27194567-27194699,27194941-27195221
Length = 710
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -1
Query: 203 HHCLNCRYCQSHDPSD 156
HH L+ YCQ HD D
Sbjct: 627 HHRLHSAYCQFHDTED 642
>06_01_1145 -
9575173-9575553,9575712-9575858,9575971-9576024,
9576692-9576862,9577004-9577231,9577392-9577478,
9577600-9577761
Length = 409
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +1
Query: 76 NEMECHPHSNFSAVLS-EYYGL 138
++M HPHS+ + V S YYG+
Sbjct: 141 HDMSSHPHSHLAGVTSGHYYGV 162
>06_01_0303 +
2194345-2194414,2195228-2195328,2195818-2196657,
2196743-2196889,2196985-2197365
Length = 512
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 46 RSECLSILDKNEMECHPHSNFSAVLSEYYGL 138
R+ C+S + CHP+ NFS SE +GL
Sbjct: 74 RAACVSRSFLSSWRCHPNLNFS---SEAFGL 101
>01_06_0932 -
33147656-33148098,33148631-33148675,33148815-33148945,
33149192-33149817
Length = 414
Score = 25.4 bits (53), Expect = 6.4
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = -2
Query: 160 VIMPVVSVGHSTLIEQQKSYCEGDTPFHFCPKWKDTRFGTNKIMYNLTKAWTH 2
V++P G +++ KS + D FHFC K + ++Y++T A+ H
Sbjct: 231 VLLPKTK-GFLCCLQELKSSLDADIRFHFCEKLE-----VLLLIYDVTIAYKH 277
>11_01_0494 + 3804913-3805679,3806341-3806530
Length = 318
Score = 25.0 bits (52), Expect = 8.5
Identities = 8/28 (28%), Positives = 17/28 (60%)
Frame = -1
Query: 245 LKMNHLKMNCLKMNHHCLNCRYCQSHDP 162
++++H + C ++ HC +CR + H P
Sbjct: 288 VRLSHQE-GCFSVSGHCPSCRCSRGHGP 314
>10_08_0153 - 15240707-15241019,15241269-15241723
Length = 255
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 32 YFICTEASVFPFWTKMKWSVTLTVTFL 112
Y I +AS P W K +VT+T T L
Sbjct: 80 YLIMCDASKTPEWCKAGTAVTITATNL 106
>09_04_0727 +
19765175-19765384,19765523-19765595,19766476-19766570,
19766666-19768450,19768533-19768721,19768816-19768958,
19769075-19769320,19769975-19770059,19770117-19770191,
19770304-19770369,19770466-19770712,19770824-19771242
Length = 1210
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +2
Query: 5 CPGFC*IIHYFICTEASVFPFWTKMKWSVTLTVTFLLFYQSTMAYRHHW 151
C G+C +CTEA++ F K T F++ S ++H+
Sbjct: 590 CVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFVIDVDSVRVEKYHF 638
>07_03_1099 + 23945867-23945872,23945951-23946547,23948928-23949341
Length = 338
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = -1
Query: 248 RLKMNHLKMNCLKMNHHCLNCRYCQSHDPSDHASG 144
R+K+ + +C NHH + S P H +G
Sbjct: 113 RIKLGDYQWSCDHCNHHATHPSLSPSTSPRTHRAG 147
>07_01_0874 -
7261191-7261274,7262291-7262440,7262769-7262916,
7263136-7263259,7263452-7263653,7263743-7263848,
7263979-7264442
Length = 425
Score = 25.0 bits (52), Expect = 8.5
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = -1
Query: 218 CLKMNHHCLNCRYCQSH 168
C +NH +NC+Y + H
Sbjct: 145 CRSINHSHINCKYLRDH 161
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,558,850
Number of Sequences: 37544
Number of extensions: 89358
Number of successful extensions: 316
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 14,793,348
effective HSP length: 61
effective length of database: 12,503,164
effective search space used: 262566444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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