Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S13A01NGRL0001_A23
(248 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 24 0.25
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 24 0.25
AJ555537-1|CAD88245.1| 210|Apis mellifera putative chemosensory... 22 1.3
L01587-1|AAA27734.1| 69|Apis mellifera zinc finger protein pro... 21 1.7
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 21 3.1
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 20 4.0
AY242387-1|AAO72539.2| 693|Apis mellifera prophenoloxidase prot... 20 5.3
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 19 7.1
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 19 7.1
AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein. 19 7.1
AY463910-1|AAR24352.1| 843|Apis mellifera metabotropic glutamat... 19 7.1
AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamat... 19 7.1
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 19 9.3
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 19 9.3
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 19 9.3
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 19 9.3
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 19 9.3
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 19 9.3
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 19 9.3
AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein. 19 9.3
AB095513-1|BAC76335.1| 39|Apis mellifera brood-complex protein. 19 9.3
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 24.2 bits (50), Expect = 0.25
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Frame = +3
Query: 6 VQAFVKLYIILFVPKRVSFHFGQK*--NGVSPSQ*LF-CCSIRVLWPTDTTGMITGVMTL 176
V F L+++ F +S+ FG +G+ + CC ++ W T + GV T
Sbjct: 450 VSGFCLLFLMFFECIAISWAFGVNRFYDGIRDMIGYYPCCWWKICWTITTPAICVGVFTF 509
Query: 177 TV 182
+
Sbjct: 510 NI 511
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 24.2 bits (50), Expect = 0.25
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Frame = +3
Query: 6 VQAFVKLYIILFVPKRVSFHFGQK*--NGVSPSQ*LF-CCSIRVLWPTDTTGMITGVMTL 176
V F L+++ F +S+ FG +G+ + CC ++ W T + GV T
Sbjct: 503 VSGFCLLFLMFFECIAISWAFGVNRFYDGIRDMIGYYPCCWWKICWTITTPAICVGVFTF 562
Query: 177 TV 182
+
Sbjct: 563 NI 564
>AJ555537-1|CAD88245.1| 210|Apis mellifera putative chemosensory
receptor 2 protein.
Length = 210
Score = 21.8 bits (44), Expect = 1.3
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 153 MITGVMTLTVATVQAVMIH 209
M+T +TLT+ QA IH
Sbjct: 132 MLTTTITLTLLAYQATKIH 150
>L01587-1|AAA27734.1| 69|Apis mellifera zinc finger protein
protein.
Length = 69
Score = 21.4 bits (43), Expect = 1.7
Identities = 7/23 (30%), Positives = 11/23 (47%)
Frame = -1
Query: 236 NHLKMNCLKMNHHCLNCRYCQSH 168
+HLK + + C NC Y +
Sbjct: 34 SHLKSHSNVYQYRCANCTYATKY 56
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 20.6 bits (41), Expect = 3.1
Identities = 7/15 (46%), Positives = 7/15 (46%)
Frame = -1
Query: 200 HCLNCRYCQSHDPSD 156
HC NC Q D D
Sbjct: 608 HCFNCTQYQIRDHKD 622
Score = 19.4 bits (38), Expect = 7.1
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +3
Query: 21 KLYIILFVPKR 53
KLYIIL P+R
Sbjct: 901 KLYIILIRPER 911
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 20.2 bits (40), Expect = 4.0
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +3
Query: 114 CSIRVLWPTDTTGMITGV 167
C++RVL P TG++ +
Sbjct: 46 CTLRVLDPGAITGLVASL 63
>AY242387-1|AAO72539.2| 693|Apis mellifera prophenoloxidase
protein.
Length = 693
Score = 19.8 bits (39), Expect = 5.3
Identities = 5/6 (83%), Positives = 5/6 (83%)
Frame = +2
Query: 143 HHWHDH 160
HHWH H
Sbjct: 208 HHWHWH 213
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 19.4 bits (38), Expect = 7.1
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = +1
Query: 19 LNYTLFYLYRSECLSIL 69
L Y LF+ Y CL ++
Sbjct: 244 LGYYLFHTYIPTCLIVI 260
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 19.4 bits (38), Expect = 7.1
Identities = 5/22 (22%), Positives = 13/22 (59%)
Frame = +3
Query: 3 CVQAFVKLYIILFVPKRVSFHF 68
C+ + +I+F+P+ + +F
Sbjct: 404 CISLVYIIMLIIFIPRNIYENF 425
>AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein.
Length = 996
Score = 19.4 bits (38), Expect = 7.1
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = -2
Query: 139 VGHSTLIEQQKSYCEGD 89
V ++ +IEQ C+GD
Sbjct: 221 VANAVVIEQPTFLCKGD 237
>AY463910-1|AAR24352.1| 843|Apis mellifera metabotropic glutamate
receptor 1 protein.
Length = 843
Score = 19.4 bits (38), Expect = 7.1
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +3
Query: 21 KLYIILFVPKR 53
K+YIILF P +
Sbjct: 759 KIYIILFQPDK 769
>AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamate
receptor protein.
Length = 933
Score = 19.4 bits (38), Expect = 7.1
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +3
Query: 21 KLYIILFVPKR 53
K+YIILF P +
Sbjct: 849 KIYIILFQPDK 859
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 19.0 bits (37), Expect = 9.3
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +2
Query: 86 SVTLTVTFLLFYQST 130
SV LTV L+F+ T
Sbjct: 271 SVVLTVLVLIFHHRT 285
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 19.0 bits (37), Expect = 9.3
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +2
Query: 86 SVTLTVTFLLFYQST 130
SV LTV L+F+ T
Sbjct: 271 SVVLTVLVLIFHHRT 285
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 19.0 bits (37), Expect = 9.3
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +2
Query: 86 SVTLTVTFLLFYQST 130
SV LTV L+F+ T
Sbjct: 271 SVVLTVLVLIFHHRT 285
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 19.0 bits (37), Expect = 9.3
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +2
Query: 86 SVTLTVTFLLFYQST 130
SV LTV L+F+ T
Sbjct: 271 SVVLTVLVLIFHHRT 285
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 19.0 bits (37), Expect = 9.3
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +2
Query: 86 SVTLTVTFLLFYQST 130
SV LTV L+F+ T
Sbjct: 271 SVVLTVLVLIFHHRT 285
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 19.0 bits (37), Expect = 9.3
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +2
Query: 86 SVTLTVTFLLFYQST 130
SV LTV L+F+ T
Sbjct: 271 SVVLTVLVLIFHHRT 285
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 19.0 bits (37), Expect = 9.3
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +2
Query: 77 MKWSVTLTVTFLLFYQST 130
MK + + FLLF+Q++
Sbjct: 1 MKMRIITALGFLLFWQNS 18
>AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein.
Length = 429
Score = 19.0 bits (37), Expect = 9.3
Identities = 6/20 (30%), Positives = 9/20 (45%)
Frame = -2
Query: 79 HFCPKWKDTRFGTNKIMYNL 20
HFC +W + + NL
Sbjct: 6 HFCLRWNNYQSSITSAFENL 25
>AB095513-1|BAC76335.1| 39|Apis mellifera brood-complex protein.
Length = 39
Score = 19.0 bits (37), Expect = 9.3
Identities = 6/20 (30%), Positives = 9/20 (45%)
Frame = -2
Query: 79 HFCPKWKDTRFGTNKIMYNL 20
HFC +W + + NL
Sbjct: 6 HFCLRWNNYQSSITSAFENL 25
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,755
Number of Sequences: 438
Number of extensions: 1126
Number of successful extensions: 22
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used: 4401495
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)
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