Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S13A01NGRL0001_A21
         (128 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    23   5.6  
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ...    23   5.6  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    22   9.7  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    22   9.7  

>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -2

Query: 109  HQIWNRRFHGYYSNHQTF 56
            H IW R F G Y  H  F
Sbjct: 1267 HGIWRRTFTGLYIVHLLF 1284


>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 59  CLVVGIIAVETAVPNLVEV 115
           C ++G I + TAVP+ V++
Sbjct: 95  CYIIGQILLVTAVPSWVQI 113


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 103 IWNRRFHGYYSNHQTF 56
           +W++RF  +Y  H  F
Sbjct: 458 LWSKRFSRFYYGHYVF 473


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 65   VVGIIAVETAVPNLVEVTNLA 127
            +VG+ A +T  P  V +TN+A
Sbjct: 2059 LVGLPAFDTVAPGRVWITNVA 2079


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 422,856
Number of Sequences: 5004
Number of extensions: 4007
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 2,362,478
effective HSP length: 23
effective length of database: 2,247,386
effective search space used: 42700334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)