Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S13A01NGRL0001_A21
         (128 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    19   4.1  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    18   9.6  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    18   9.6  

>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -3

Query: 90  VSTAIIPTTR 61
           VST I+PTT+
Sbjct: 81  VSTTIVPTTQ 90


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 6/23 (26%), Positives = 10/23 (43%)
 Frame = -2

Query: 118 CYLHQIWNRRFHGYYSNHQTFSI 50
           CY  Q W  R   +    +T ++
Sbjct: 55  CYFRQSWVDRRLAFQGGKETLAL 77


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
          protein 9 protein.
          Length = 423

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 4/5 (80%), Positives = 5/5 (100%)
 Frame = +3

Query: 57 NVWWL 71
          N+WWL
Sbjct: 4  NIWWL 8


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,898
Number of Sequences: 438
Number of extensions: 354
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 23
effective length of database: 136,269
effective search space used:  2589111
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)