Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S13A01NGRL0001_A20
(426 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0317 + 33097257-33097336,33098500-33098926,33100007-331000... 29 1.2
07_01_0616 + 4560866-4560952,4561144-4561208,4564481-4564913,456... 29 2.1
06_03_1508 - 30653967-30654245,30654342-30654631,30654773-306548... 28 3.6
02_01_0552 + 4074001-4074341,4075118-4075257,4075647-4075838,407... 28 3.6
01_05_0521 - 22904656-22904962,22905132-22905340,22905432-229055... 28 3.6
08_02_0721 + 20401217-20401360,20401689-20401809,20401969-204020... 27 6.3
04_04_0851 + 28716695-28716820,28718134-28718283,28718804-287190... 27 6.3
10_08_0578 - 18896759-18896866,18897708-18897785,18898244-188982... 27 8.3
>03_06_0317 +
33097257-33097336,33098500-33098926,33100007-33100078,
33100490-33100600,33100973-33101173,33102157-33102222
Length = 318
Score = 29.5 bits (63), Expect = 1.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 55 TNEKSDCVVACPPERTCKNRDIKFSCIHDQKCQ 153
T+E+SD VV CPP+ +R+ S + CQ
Sbjct: 38 TDEESDGVVICPPDGNNDDREEAISSNNHDNCQ 70
>07_01_0616 +
4560866-4560952,4561144-4561208,4564481-4564913,
4565634-4565786,4565875-4565946,4567602-4567712,
4568344-4568584,4568743-4568821,4568892-4569018
Length = 455
Score = 28.7 bits (61), Expect = 2.1
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 55 TNEKSDCVVACPPERTCKNRDIKFSCIHDQ 144
T+++SDCVV CPP + ++ S HD+
Sbjct: 62 TDDESDCVVICPPNGKAGHTEV-MSGRHDE 90
>06_03_1508 -
30653967-30654245,30654342-30654631,30654773-30654841,
30654854-30654921,30655016-30655492,30655578-30655874,
30655974-30656824,30656917-30656990,30657270-30657292,
30657709-30657772,30658098-30658370,30658511-30658587,
30658686-30658912
Length = 1022
Score = 27.9 bits (59), Expect = 3.6
Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 6/58 (10%)
Frame = +1
Query: 91 PERT--CKNRDIKFSCIHDQKCQIKC----VCKEGFIRNNNGICVRENECDRVEPRHK 246
P RT C+ F C H C I C C E + GIC + + + HK
Sbjct: 169 PSRTLDCRGCCAGFFCPHGLTCMIPCPLGAYCPESTLNKTTGICDPKGSTSQTKCFHK 226
>02_01_0552 +
4074001-4074341,4075118-4075257,4075647-4075838,
4077211-4077518
Length = 326
Score = 27.9 bits (59), Expect = 3.6
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Frame = -3
Query: 346 CSVHAIQSRHYHRRGRTCKTH--FYRYILLDHQNCACAAAQLCH 221
C V + + YHR+ R C+ H F R ++ + C H
Sbjct: 73 CGVELVGVKDYHRKHRVCEAHSKFPRVVVAGQERRFCQQCSRFH 116
>01_05_0521 -
22904656-22904962,22905132-22905340,22905432-22905521,
22905624-22905734,22906401-22906468,22906611-22906653
Length = 275
Score = 27.9 bits (59), Expect = 3.6
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -2
Query: 236 GSTLSHSFSRTHMPLLFLIKPSLQTH 159
G+ LSHSFSR L+F + SL H
Sbjct: 198 GAELSHSFSRNESTLIFGSQHSLDPH 223
>08_02_0721 +
20401217-20401360,20401689-20401809,20401969-20402067,
20402790-20402851,20403680-20403797,20404004-20404343,
20404435-20404582,20405043-20405144,20405240-20405359,
20405812-20405895,20405974-20406101,20408314-20408389,
20408556-20408631,20408800-20408876,20408975-20409031,
20409411-20409555,20409634-20409806,20409928-20410054,
20410090-20410192,20410492-20410688,20410946-20411097
Length = 882
Score = 27.1 bits (57), Expect = 6.3
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 278 VKMSFTCAAPPVIMSALNCMNRTEPIAQF*ILCATENA 391
V S P + MSA +C+N +P+ Q +LC E A
Sbjct: 718 VLSSLAANVPKLSMSA-SCINIIDPVEQAVVLCQVEKA 754
>04_04_0851 +
28716695-28716820,28718134-28718283,28718804-28719035,
28719135-28719244,28719565-28719689,28719974-28720082,
28720677-28720721
Length = 298
Score = 27.1 bits (57), Expect = 6.3
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Frame = +1
Query: 7 IYAVCAASTQELKCNGTNEKSD-CVVACPPERTCKNRD--IKFSCIHD--QKCQIK 159
+ A+ ST +++ EK D CV+ C T KNRD K C H Q C K
Sbjct: 226 VIALLPTSTYKIRIFSRKEKHDECVICC---MTYKNRDRLTKLPCEHQYHQTCVTK 278
>10_08_0578 -
18896759-18896866,18897708-18897785,18898244-18898285,
18898434-18898502,18898593-18898799,18898878-18898993,
18899532-18899586
Length = 224
Score = 26.6 bits (56), Expect = 8.3
Identities = 10/41 (24%), Positives = 21/41 (51%)
Frame = +1
Query: 79 VACPPERTCKNRDIKFSCIHDQKCQIKCVCKEGFIRNNNGI 201
+ PP+ CK++ + S + D K + + F+R+ N +
Sbjct: 25 IVAPPDLQCKDKFLVQSVVVDDGLSAKDITSQMFLRDENNM 65
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,038,615
Number of Sequences: 37544
Number of extensions: 258197
Number of successful extensions: 619
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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