Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S13A01NGRL0001_A20
         (426 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    37   8e-05
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    37   8e-05
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    26   0.20 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    26   0.20 
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   5.8  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 37.1 bits (82), Expect = 8e-05
 Identities = 21/60 (35%), Positives = 29/60 (48%)
 Frame = +1

Query: 43  KCNGTNEKSDCVVACPPERTCKNRDIKFSCIHDQKCQIKCVCKEGFIRNNNGICVRENEC 222
           KC      S C   C  +R C N   K  CI  + C   CVC+ G++RN   +CV  ++C
Sbjct: 36  KCPSNEIFSRCDGRC--QRFCPNVVPKPLCI--KICAPGCVCRLGYLRNKKKVCVPRSKC 91


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 37.1 bits (82), Expect = 8e-05
 Identities = 21/60 (35%), Positives = 29/60 (48%)
 Frame = +1

Query: 43  KCNGTNEKSDCVVACPPERTCKNRDIKFSCIHDQKCQIKCVCKEGFIRNNNGICVRENEC 222
           KC      S C   C  +R C N   K  CI  + C   CVC+ G++RN   +CV  ++C
Sbjct: 36  KCPSNEIFSRCDGRC--QRFCPNVVPKPLCI--KICAPGCVCRLGYLRNKKKVCVPRSKC 91


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 25.8 bits (54), Expect = 0.20
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 234 LNSVTFILANTYAIIVSNKTFFANTFYLTFLVMN 133
           LN +T ILAN+ AII+  +   A    +  L+ N
Sbjct: 16  LNRITHILANSPAIIILGQDSKAKAIVVNTLISN 49


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 25.8 bits (54), Expect = 0.20
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 234 LNSVTFILANTYAIIVSNKTFFANTFYLTFLVMN 133
           LN +T ILAN+ AII+  +   A    +  L+ N
Sbjct: 54  LNRITHILANSPAIIILGQDSKAKAIVVNTLISN 87


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +2

Query: 218 NVTELSRGTSAILMIQ*NVPVKMSFTCAAPPVIMSALNCMNRT 346
           N   +  G +AI+M+Q   P+ +      PP+   A+  M +T
Sbjct: 390 NPKSIKSGDAAIVMLQPTKPMCVEAFQEFPPLGRFAVRDMRQT 432


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,324
Number of Sequences: 438
Number of extensions: 3129
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10997463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)