Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S13A01NGRL0001_A19
(359 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 30 0.12
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 27 0.88
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom... 27 1.2
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar... 26 1.5
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha... 25 4.7
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip... 25 4.7
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 4.7
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 25 4.7
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy... 24 6.2
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 24 6.2
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo... 24 8.2
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 29.9 bits (64), Expect = 0.12
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 196 GNLSTGRSITLLSAKMKDPWYS*DRKRLTRANTNASLK 309
G+L G LL + PWY D R+TRA L+
Sbjct: 458 GDLHNGHYYALLKTEKDGPWYKYDDTRVTRATLREVLE 495
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 27.1 bits (57), Expect = 0.88
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +2
Query: 14 SKSIAVLSACIIVGSALPVDKYPVLKDQPAE 106
SKSIA L CI +G + P K PV+K Q E
Sbjct: 57 SKSIAKLDLCIELGRSYPYVK-PVIKLQNGE 86
>SPCPJ732.01 |vps5||retromer complex subunit
Vps5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 26.6 bits (56), Expect = 1.2
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +1
Query: 136 PRMSHRTETIRESSTPGKRMGNLSTGRSITLLSA 237
PRM+HRT I SS+P R G ++G + SA
Sbjct: 318 PRMTHRTTLIESSSSP-LRSGPSTSGLLDSFTSA 350
>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 404
Score = 26.2 bits (55), Expect = 1.5
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +1
Query: 85 AERPTGRGPLQGEQPNGPRMSHRTETIRESSTPG 186
A P G G G PNG R ++TE + G
Sbjct: 306 ASHPHGSGSSNGVAPNGKRALYKTEPCKNWQISG 339
>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
Wis1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 605
Score = 24.6 bits (51), Expect = 4.7
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = +1
Query: 175 STPGKRMGNLSTGRSITLLSAKMKDPWYS*DRKRLTRA-NTNASLKPQPVLPARG 336
+ P R+G ++ RS L+ MKDP R T A N P P P G
Sbjct: 85 AVPTVRLGRSTSSRSRNSLNLDMKDPSEKPRRSLPTAAGQNNIGSPPTPPGPFPG 139
>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
antiporter Sod22|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 24.6 bits (51), Expect = 4.7
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = -3
Query: 189 FARST*LPDRFRSMRHSRTVGLFSLKRTSAGWSFSTGYLSTGSAEPTIMQALNTAMLLDA 10
FA LP R +RH R++ + L GW STG++ + +++L A + A
Sbjct: 84 FAAGAELP-RAYMLRHWRSMFVMLLPVMIFGWLVSTGFMYALIPRLSFLESLAIAACITA 142
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 24.6 bits (51), Expect = 4.7
Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 11/115 (9%)
Frame = +1
Query: 25 SSIKRLHNCGLSASR------G*IPGAERPTGRGPLQGEQPNGPRMSHRTETIRESSTPG 186
S+ K LH+ SA+R +PG ++ GPR+S + + + P
Sbjct: 4 STKKSLHSMSDSANRFQNKITSKLPGEHGEDAMYDIRSVHGTGPRLSIKYVDVTKLPPPP 63
Query: 187 K-----RMGNLSTGRSITLLSAKMKDPWYS*DRKRLTRANTNASLKPQPVLPARG 336
K R G STG + S + + YS + + +P LP+RG
Sbjct: 64 KHASQLRAGGSSTGSTPRTASPAVGNQDYSKPSYSQPSYSQPSQPPKEPALPSRG 118
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 24.6 bits (51), Expect = 4.7
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 113 FKENNPTVLECLIERKRSGSQ 175
F+ + P +L CL+ RK++GSQ
Sbjct: 140 FQRDQPELL-CLVTRKKAGSQ 159
>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 274
Score = 24.2 bits (50), Expect = 6.2
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Frame = +1
Query: 88 ERPTGRGPLQGEQPNGP----RMSHRTETIRESSTPGKR 192
+R G L E+ P R SH+ +++ +SS P K+
Sbjct: 135 DRKIEEGELTSEEEKEPIQDLRKSHKRKSVEKSSVPNKK 173
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 24.2 bits (50), Expect = 6.2
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +1
Query: 79 PGAERPTGRGPLQGEQPNG 135
PG RP GRG G+ P G
Sbjct: 98 PGVARPAGRGIPLGQAPVG 116
>SPAC6G10.07 |||nuclear cap-binding complex large subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 780
Score = 23.8 bits (49), Expect = 8.2
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +1
Query: 112 LQGEQPNGPRMSHRTET 162
L GEQP+GP + ET
Sbjct: 504 LLGEQPSGPNFVYENET 520
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,537,942
Number of Sequences: 5004
Number of extensions: 30204
Number of successful extensions: 91
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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