Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S13A01NGRL0001_A19
(359 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0915 + 28755584-28756139,28756695-28756846,28756994-287569... 31 0.21
05_03_0008 + 7332224-7332700,7335136-7335153,7335747-7335848,733... 30 0.48
08_01_0422 + 3737429-3738006,3738083-3738824 28 1.9
06_01_1090 - 8945909-8946125,8946607-8947562,8947733-8949835 28 2.5
04_03_0812 - 19922208-19922357,19922448-19922564,19922681-199227... 28 2.5
03_02_0735 + 10811326-10812342,10813199-10813555,10813962-108142... 28 2.5
11_06_0578 + 25176304-25176388,25176503-25177032,25177267-251779... 27 3.4
05_01_0054 + 379974-380215,380343-380556,381603-381892,382384-38... 27 3.4
12_02_0029 - 12459565-12459804,12460013-12460121,12460507-124605... 27 5.9
04_01_0615 - 8060085-8060972 27 5.9
03_01_0117 + 925850-925988,926075-926494,926607-926785,927568-92... 27 5.9
01_07_0050 - 40751994-40752086,40752193-40752300,40752501-407526... 27 5.9
09_02_0419 + 9046090-9046333,9046451-9046634,9046733-9046947,904... 26 7.7
08_02_0479 + 17627605-17627839,17628965-17629107,17630018-176301... 26 7.7
06_03_0725 - 23894215-23894412,23894660-23894803,23895058-238951... 26 7.7
>03_05_0915 +
28755584-28756139,28756695-28756846,28756994-28756996,
28757587-28757690,28758033-28758121,28758682-28758825,
28759194-28759291,28759380-28759502,28760045-28760113,
28760206-28760406
Length = 512
Score = 31.5 bits (68), Expect = 0.21
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 258 FLRPQASDEGQYQCFAETPAGVASSRVIS 344
FLRP A+D Y CF GVAS ++I+
Sbjct: 274 FLRPNAADLSDYGCFVVLALGVASLQMIA 302
>05_03_0008 +
7332224-7332700,7335136-7335153,7335747-7335848,
7336927-7337202,7337474-7337674
Length = 357
Score = 30.3 bits (65), Expect = 0.48
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = -3
Query: 192 PFARST*LPDRFRSMRHSRTVGLFSL---KRTSAGWSFSTGYLSTGSA 58
P R T P RFRS+ SRT+ L L R + S ST L+ G A
Sbjct: 24 PAPRPTITPSRFRSLLRSRTLSLARLDGAARADSAASSSTSRLADGDA 71
>08_01_0422 + 3737429-3738006,3738083-3738824
Length = 439
Score = 28.3 bits (60), Expect = 1.9
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +3
Query: 180 SWQKDGKSFNWQEHNAALRKDEGSLVFLRPQASDEGQYQCF--AETP 314
SWQ G+ W++ A R+D V LR + +GQ C AETP
Sbjct: 282 SWQPWGRLEAWRDQGGAARQD---TVCLRLRLLPDGQDACMLVAETP 325
>06_01_1090 - 8945909-8946125,8946607-8947562,8947733-8949835
Length = 1091
Score = 27.9 bits (59), Expect = 2.5
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 247 PSSLRRAALCSCQLKDFPSFCQ 182
P SLRR ++ +C+ DFP++ Q
Sbjct: 911 PPSLRRLSIVNCRKLDFPAYLQ 932
>04_03_0812 -
19922208-19922357,19922448-19922564,19922681-19922752,
19922864-19923993,19924939-19925008,19925125-19925199
Length = 537
Score = 27.9 bits (59), Expect = 2.5
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -2
Query: 157 PFDETFEDRWVVLLEED 107
PFDE+FE RWV+ ++D
Sbjct: 30 PFDESFEGRWVLSGKDD 46
>03_02_0735 +
10811326-10812342,10813199-10813555,10813962-10814225,
10814894-10815010,10815796-10815944,10816315-10816606,
10816681-10816845,10817106-10817357
Length = 870
Score = 27.9 bits (59), Expect = 2.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 32 LSACIIVGSALPVDKYPVLKD 94
L AC + G+ LP+D++ KD
Sbjct: 605 LGACALAGTGLPIDRFKTAKD 625
>11_06_0578 +
25176304-25176388,25176503-25177032,25177267-25177997,
25178122-25178172,25178562-25178813,25178894-25179004,
25179102-25179183,25179460-25179489
Length = 623
Score = 27.5 bits (58), Expect = 3.4
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 195 GKSFNWQEHNAALRKDEGSLVFLRPQASDEGQYQCFAETP 314
GK++ W + + DEG ++F P +E Y AE P
Sbjct: 178 GKNWVWARNTDQV-SDEGDILFETPDIEEEHFYSLAAENP 216
>05_01_0054 +
379974-380215,380343-380556,381603-381892,382384-382560,
382705-383481,383572-383645,383757-383819,383919-384007,
384106-384201,384319-384978,385613-385687,386422-386492,
386578-386635,386900-387104,387379-387869
Length = 1193
Score = 27.5 bits (58), Expect = 3.4
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +1
Query: 82 GAERPTGRGPLQGEQPNGPRMSHRTETIRESSTPGKRMG--NLSTGRS 219
GAE+P+G G L+ N + ++ +R S G+ G N+ST +S
Sbjct: 117 GAEKPSGSGALRIGAQNSNSSAVMSKRVRSSLADGRLEGRSNISTRQS 164
>12_02_0029 -
12459565-12459804,12460013-12460121,12460507-12460599,
12460965-12461208,12462302-12462338
Length = 240
Score = 26.6 bits (56), Expect = 5.9
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 186 QKDGKSFNWQEHNAALRKDEGSLVFLRPQASDEG 287
Q +G W+ NAA R+ G V ++ + +EG
Sbjct: 203 QDNGVQAKWESFNAAARRGWGGGVVVKQRGGEEG 236
>04_01_0615 - 8060085-8060972
Length = 295
Score = 26.6 bits (56), Expect = 5.9
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +2
Query: 5 TMASKSIAVLSACIIVGSALPVDKYPVLKDQPAEVLFKENNPTVL 139
+ ASK+ AVL VG ALP P QP E + ++ ++L
Sbjct: 119 SFASKAAAVLPCLTTVGPALP--GAPSTPSQPRETILSRHDRSLL 161
>03_01_0117 +
925850-925988,926075-926494,926607-926785,927568-927686,
928180-928498
Length = 391
Score = 26.6 bits (56), Expect = 5.9
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -2
Query: 334 LELATPAGVSAKHWYWPSSDACGLRNTRDPSSLRRAALCSCQLKDF 197
+E+ P G W P + A R+ DP+ + RAA S + F
Sbjct: 1 MEVDDPRGWDFVDWVGPDASASIFRSLDDPADIVRAAAVSRSWRRF 46
>01_07_0050 -
40751994-40752086,40752193-40752300,40752501-40752667,
40752756-40752882,40752984-40753145,40753674-40753837,
40753931-40754024,40754160-40754284,40754387-40754532,
40754676-40754764,40755524-40755589,40755990-40756148
Length = 499
Score = 26.6 bits (56), Expect = 5.9
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 110 LFKENNPTVLECLIERKRSGSQVLLAKGWE 199
+F+ NNP LE L+ + SG Q + W+
Sbjct: 222 VFEHNNPAHLEKLLREQISGGQPRTHRAWK 251
>09_02_0419 +
9046090-9046333,9046451-9046634,9046733-9046947,
9047261-9047384,9047462-9047633
Length = 312
Score = 26.2 bits (55), Expect = 7.7
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 183 WQKDGKSFNWQEHNAALRKDEGSLVF 260
W K+G ++NW H++ D GS+ F
Sbjct: 258 WTKEGVTYNW--HSSVKDIDTGSMAF 281
>08_02_0479 +
17627605-17627839,17628965-17629107,17630018-17630137,
17630497-17630721
Length = 240
Score = 26.2 bits (55), Expect = 7.7
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 98 PAEVLFKENNPTVLECLIERKRSGSQVLLAK 190
PAE+LF+ VL CL +VLL K
Sbjct: 39 PAELLFRPRRAAVLICLFRGAAGELRVLLTK 69
>06_03_0725 -
23894215-23894412,23894660-23894803,23895058-23895126,
23895197-23895267,23895357-23895444,23895522-23895707,
23895805-23895903,23896002-23896082,23896575-23896634,
23896656-23896779,23897026-23897120,23897205-23897331,
23897559-23897662,23897883-23897945
Length = 502
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 106 GPLQGEQPNGPRMSHRTETIRESSTPGKRM 195
G GE+P P H++ T+R +TP +R+
Sbjct: 422 GSSLGERPEIPSHKHKSMTLRALATPLRRI 451
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,587,712
Number of Sequences: 37544
Number of extensions: 222431
Number of successful extensions: 705
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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