Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S13A01NGRL0001_A18
(224 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 25 1.0
SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr 3|... 24 2.4
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe... 23 4.1
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 23 4.1
SPBC543.10 |||GET complex subunit |Schizosaccharomyces pombe|chr... 23 5.4
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 23 5.4
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 23 7.2
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 23 7.2
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 22 9.5
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 22 9.5
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 22 9.5
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi... 22 9.5
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 25.4 bits (53), Expect = 1.0
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 32 IYTIFTIFLSWKSVRADCGVVSKKDWGGLSPVHIEY 139
I+T + + S+ S+R K WGG V+I Y
Sbjct: 564 IFTSYVLIYSFASIRISSFYSPAKVWGGAFLVYILY 599
>SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 347
Score = 24.2 bits (50), Expect = 2.4
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -3
Query: 144 GKYSICTGDSPPQSFLE 94
G++ +C GDSP F E
Sbjct: 170 GRFMVCVGDSPQVFFYE 186
>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 319
Score = 23.4 bits (48), Expect = 4.1
Identities = 6/16 (37%), Positives = 12/16 (75%)
Frame = +3
Query: 72 CELIVEWSLRKIGADY 119
C+++ +W ++KI DY
Sbjct: 246 CKIVHDWDIKKIQKDY 261
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 23.4 bits (48), Expect = 4.1
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 65 KSVRADCGVVSKKDWGGLSPVHIEYL 142
K RADC + KD LSP + +L
Sbjct: 184 KRRRADCVFFTWKDPNSLSPTKLSFL 209
>SPBC543.10 |||GET complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 171
Score = 23.0 bits (47), Expect = 5.4
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 112 RTITGAYRVFASADQPGD 165
RTI GAYR++ S D
Sbjct: 25 RTIDGAYRIYVSVSNNKD 42
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 23.0 bits (47), Expect = 5.4
Identities = 11/38 (28%), Positives = 16/38 (42%)
Frame = +2
Query: 104 DWGGLSPVHIEYLPRPISLVIIQHTVTPTCETNEACMV 217
D+ GL Y P S + + TP + + CMV
Sbjct: 364 DYAGLKQTVYNYQEDPKSTLSFKKNYTPNLSSLKLCMV 401
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 22.6 bits (46), Expect = 7.2
Identities = 8/27 (29%), Positives = 17/27 (62%)
Frame = +2
Query: 122 PVHIEYLPRPISLVIIQHTVTPTCETN 202
P + ++P+ I ++ + HT+T T E +
Sbjct: 354 PELLPFIPKYIGVLNVTHTITKTEEND 380
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 22.6 bits (46), Expect = 7.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 128 HIEYLPRPISLVIIQHTVTPTCETNEACMV 217
H + RP+S+ TVTPT ET E +V
Sbjct: 698 HSTFTMRPLSIERTTLTVTPT-ETGELHIV 726
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 22.2 bits (45), Expect = 9.5
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = -3
Query: 126 TGDSPPQSFLETTPQSARTLFQLKNIVNI 40
TGD+P + L TP R +K N+
Sbjct: 1008 TGDTPSKRELPATPSWTRDSSLIKETTNL 1036
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 22.2 bits (45), Expect = 9.5
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +1
Query: 109 GRTITGAYRVFASADQP 159
G TITG + V+ D P
Sbjct: 1006 GETITGTHDVYRQTDNP 1022
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 22.2 bits (45), Expect = 9.5
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3
Query: 102 FLETTPQSARTLFQLKNIVN 43
FLE TP ++ L Q KN N
Sbjct: 13 FLEATPYESKVLEQPKNSSN 32
>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1419
Score = 22.2 bits (45), Expect = 9.5
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 50 IFLSWKSVRADCGVVSKKDWGGLSPVHIEYLPRPISL 160
I+LS RA +V +D G LSP +EY+ + + L
Sbjct: 378 IYLSVAKPRA---LVVLEDAGVLSPTVVEYVEKSLEL 411
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,008,601
Number of Sequences: 5004
Number of extensions: 17784
Number of successful extensions: 39
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 54
effective length of database: 2,092,262
effective search space used: 41845240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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