Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S13A01NGRL0001_A18
(224 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0315 - 2347254-2347345,2347485-2347895,2348182-2349633,234... 27 1.5
10_08_0936 - 21679002-21679800,21679893-21680116,21681174-216813... 27 1.5
06_03_1415 + 30013398-30014548,30021401-30021552,30022596-30022624 26 3.6
06_03_1446 - 30220158-30220278,30220866-30222229 26 4.7
06_03_1434 - 30139990-30140110,30140698-30142061 26 4.7
02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,290... 26 4.7
04_04_1521 - 34140669-34140878 25 6.2
04_01_0525 - 6886920-6887298,6888650-6888882 25 6.2
09_04_0125 - 14866215-14866339,14866878-14866953,14867486-148675... 25 8.2
>11_01_0315 -
2347254-2347345,2347485-2347895,2348182-2349633,
2349688-2350045,2350818-2351177,2351321-2351419,
2351856-2351948,2352078-2352215,2352389-2352476,
2352682-2352770,2353113-2353178,2353370-2353481,
2354702-2354901
Length = 1185
Score = 27.5 bits (58), Expect = 1.5
Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -3
Query: 171 WIITRLIGRGKYSICTGDSPP--QSFLETTPQSARTLFQLKNI 49
W + R + + + +C GD P +S TP + +L+++
Sbjct: 668 WYVVRFVSKHNHPLCKGDQVPFLRSHRRITPAEQAKMVELRDV 710
>10_08_0936 -
21679002-21679800,21679893-21680116,21681174-21681361,
21681505-21682597
Length = 767
Score = 27.5 bits (58), Expect = 1.5
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +2
Query: 74 RADCGVVSKKDWGGLSPVHIEYLPRPISL 160
R++CG ++ ++GG +P P P+ L
Sbjct: 265 RSECGFAARSEYGGTAPSEYAAAPLPLPL 293
>06_03_1415 + 30013398-30014548,30021401-30021552,30022596-30022624
Length = 443
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -3
Query: 219 VTMHASFV--SQVGVTVCWIITRLIGRGKYSICTGDSPPQSFLETTPQS 79
V+ H F+ +++ +T+ ++T+ I D PP SFLE +S
Sbjct: 277 VSQHKDFIKYAEMEITMPRVVTKTIISSGDRTMPADDPPDSFLEWVRRS 325
>06_03_1446 - 30220158-30220278,30220866-30222229
Length = 494
Score = 25.8 bits (54), Expect = 4.7
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = -3
Query: 219 VTMHASFVSQVG--VTVCWIITRLIGRGKYSICTGDSPPQSFLETTPQS 79
V+ H F+ V +T+ ++T+ I D PP SFLE +S
Sbjct: 277 VSQHKDFIKYVEMEITMPRVVTKTIISSGDRTMPADDPPDSFLEWVRRS 325
>06_03_1434 - 30139990-30140110,30140698-30142061
Length = 494
Score = 25.8 bits (54), Expect = 4.7
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = -3
Query: 219 VTMHASFVSQVG--VTVCWIITRLIGRGKYSICTGDSPPQSFLETTPQS 79
V+ H F+ V +T+ ++T+ I D PP SFLE +S
Sbjct: 277 VSQHKDFIKYVEMEITMPRVVTKTIISSGDRTMPADDPPDSFLEWVRRS 325
>02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,
2907650-2907790,2907870-2908043,2908577-2908851,
2909592-2909755,2910409-2910536,2910628-2910734,
2911747-2911880,2912266-2912441,2912530-2914257,
2915084-2915239,2915328-2915486,2915581-2915751,
2915931-2916047,2916417-2916473,2916565-2916680,
2916790-2916916,2917862-2917945
Length = 2056
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +2
Query: 59 SWKSVRADCGVVSKKDWGGL--SPVHIEYLPRPIS 157
SW++V AD ++K WG + SP + P+S
Sbjct: 1565 SWETVAADAHASTEKSWGNVTASPSDNAWSAAPVS 1599
>04_04_1521 - 34140669-34140878
Length = 69
Score = 25.4 bits (53), Expect = 6.2
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 115 TITGAYRVFASADQPGDNPA 174
T+TG RV ++D P ++PA
Sbjct: 25 TVTGGSRVLLASDAPAESPA 44
>04_01_0525 - 6886920-6887298,6888650-6888882
Length = 203
Score = 25.4 bits (53), Expect = 6.2
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 117 SPPQSFLETTPQSARTLFQLKNIVNIV*MNFISTERLSR 1
S P S+ + PQS R + + V ++F+ T LSR
Sbjct: 64 SQPSSYTQQWPQSYRQSIDMYSSVQSPNLSFLGTPTLSR 102
>09_04_0125 -
14866215-14866339,14866878-14866953,14867486-14867599,
14869849-14870010,14870358-14870486,14870618-14870704,
14871419-14871454
Length = 242
Score = 25.0 bits (52), Expect = 8.2
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = -3
Query: 147 RGKYSICTGDSPPQSFLETTPQSARTLFQLKNIVN 43
R K+ + +GDS Q+ L +R+ Q+ N+++
Sbjct: 110 RAKFDVESGDSADQALLREQAAISRSSGQMDNVIS 144
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,674,059
Number of Sequences: 37544
Number of extensions: 121612
Number of successful extensions: 305
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 14,793,348
effective HSP length: 54
effective length of database: 12,765,972
effective search space used: 255319440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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