Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S13A01NGRL0001_A18
         (224 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74040-3|CAB54276.3|  246|Caenorhabditis elegans Hypothetical pr...    26   3.1  
Z74040-2|CAA98513.1|  287|Caenorhabditis elegans Hypothetical pr...    26   3.1  
Z74040-1|CAA98514.2|  340|Caenorhabditis elegans Hypothetical pr...    26   3.1  
AL110485-3|CAB60351.1| 2145|Caenorhabditis elegans Hypothetical ...    26   4.1  
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical...    26   4.1  
Z99283-3|CAB16538.1|  327|Caenorhabditis elegans Hypothetical pr...    25   9.6  
Z29117-16|CAE17732.1|  100|Caenorhabditis elegans Hypothetical p...    25   9.6  
Z22176-15|CAE18056.1|  100|Caenorhabditis elegans Hypothetical p...    25   9.6  

>Z74040-3|CAB54276.3|  246|Caenorhabditis elegans Hypothetical
           protein K10D6.2c protein.
          Length = 246

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +2

Query: 56  LSWKSVRADCGVVSKKDWGGLSPVHIEYLPRPISLVIIQHTVTPTCETNEA 208
           L W  +RA+  VVS  D+   +P+H  Y     + ++IQ+T+    E   A
Sbjct: 50  LWWDCIRAEKHVVSVGDFYDETPLHCMYKFDNSAELVIQNTLNNIDEDGAA 100


>Z74040-2|CAA98513.1|  287|Caenorhabditis elegans Hypothetical
           protein K10D6.2b protein.
          Length = 287

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +2

Query: 56  LSWKSVRADCGVVSKKDWGGLSPVHIEYLPRPISLVIIQHTVTPTCETNEA 208
           L W  +RA+  VVS  D+   +P+H  Y     + ++IQ+T+    E   A
Sbjct: 50  LWWDCIRAEKHVVSVGDFYDETPLHCMYKFDNSAELVIQNTLNNIDEDGAA 100


>Z74040-1|CAA98514.2|  340|Caenorhabditis elegans Hypothetical
           protein K10D6.2a protein.
          Length = 340

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +2

Query: 56  LSWKSVRADCGVVSKKDWGGLSPVHIEYLPRPISLVIIQHTVTPTCETNEA 208
           L W  +RA+  VVS  D+   +P+H  Y     + ++IQ+T+    E   A
Sbjct: 50  LWWDCIRAEKHVVSVGDFYDETPLHCMYKFDNSAELVIQNTLNNIDEDGAA 100


>AL110485-3|CAB60351.1| 2145|Caenorhabditis elegans Hypothetical
            protein Y46G5A.4 protein.
          Length = 2145

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +2

Query: 83   CGVVSKKDWGGLSPVH 130
            C +V+++ WG L+P+H
Sbjct: 1108 CKMVTQRQWGSLNPLH 1123


>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
           protein Y45F10B.10 protein.
          Length = 1592

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 111 PQSFLETTPQSARTLFQLKNIVNI 40
           P +FLET  Q++R +  LKN + +
Sbjct: 241 PNAFLETNDQNSRKIEDLKNEITL 264


>Z99283-3|CAB16538.1|  327|Caenorhabditis elegans Hypothetical
           protein Y70C5C.4 protein.
          Length = 327

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 190 GRSNGVLDYHQADRPRQILY 131
           GR+ GVLDY Q   P QI +
Sbjct: 81  GRALGVLDYFQVPIPVQIYF 100


>Z29117-16|CAE17732.1|  100|Caenorhabditis elegans Hypothetical
           protein ZK1098.11 protein.
          Length = 100

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 119 SPVHIEYLPRPISLVIIQHTVTP 187
           S  ++EY   P  ++  QHTVTP
Sbjct: 22  SKAYLEYAELPNRVLDFQHTVTP 44


>Z22176-15|CAE18056.1|  100|Caenorhabditis elegans Hypothetical
           protein ZK1098.11 protein.
          Length = 100

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 119 SPVHIEYLPRPISLVIIQHTVTP 187
           S  ++EY   P  ++  QHTVTP
Sbjct: 22  SKAYLEYAELPNRVLDFQHTVTP 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,612,955
Number of Sequences: 27780
Number of extensions: 101520
Number of successful extensions: 209
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 12,740,198
effective HSP length: 54
effective length of database: 11,240,078
effective search space used: 224801560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)