Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S13A01NGRL0001_A17
         (343 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    25   4.3  
SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|...    24   5.6  
SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomy...    24   5.6  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      24   7.5  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    23   9.8  
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p...    23   9.8  

>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 312 ASPNNEIKIRNTPHARIPP 256
           +SPN+   +  TPHA +PP
Sbjct: 174 SSPNSHNAVPFTPHAFVPP 192


>SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +1

Query: 229 ITGHKLANCRGYSGMWCISYFNFIIGASWSYETS 330
           I G         S  W   Y  F+IG S+S+E +
Sbjct: 131 INGKFSRELENISKEWTEDYVGFLIGCSFSFEAA 164


>SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 194

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 253 CRGYSGMWCISYFN 294
           C+GYS  +C+S F+
Sbjct: 132 CQGYSSFYCLSIFD 145


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 186 LQASSYR*LYMRRHHHWSQTCQL*GVFWHVVYFLF*FH 299
           L +S +R L +  HHH + T +    +W   +F F  H
Sbjct: 51  LVSSQFRRLKLPYHHHHTFTIEA-FFYWFFFFFFFFSH 87


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 174 RIFNAIKAFLEQVNPP 127
           RIFN+IK+F E  N P
Sbjct: 594 RIFNSIKSFDEWFNTP 609


>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = +1

Query: 190 KHPHIGSCICAGIITGHKLANCRGYSGMWCISYFNFIIGA 309
           +H   G   C G+ T + +A+C    GM      +++ G+
Sbjct: 223 RHACPGGGACGGMYTANTMASCAEAMGMTLPGSSSYLAGS 262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,329,237
Number of Sequences: 5004
Number of extensions: 24303
Number of successful extensions: 49
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)