Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S13A01NGRL0001_A17
         (343 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0094 + 14757470-14757808,14757826-14758563                       34   0.034
12_02_0953 - 24736642-24736673,24737104-24737188,24737267-247373...    27   5.1  
09_03_0067 - 12035991-12036389,12036928-12037071,12037917-120379...    27   5.1  
01_06_1624 + 38725452-38725537,38725823-38725844,38726194-38728038     26   6.7  
01_06_0509 - 29921224-29924589                                         26   8.9  

>10_08_0094 + 14757470-14757808,14757826-14758563
          Length = 358

 Score = 33.9 bits (74), Expect = 0.034
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +1

Query: 172 SLCGGCKHPHIGSCICAGIITGHKLANCRGYS 267
           S  GGCKH    S I AG  +G+ L    GYS
Sbjct: 3   STAGGCKHSRSASAIVAGAASGYHLLKIDGYS 34


>12_02_0953 - 24736642-24736673,24737104-24737188,24737267-24737386,
            24737484-24737549,24737629-24737799,24737901-24737999,
            24738075-24738186,24738282-24738343,24738412-24738483,
            24738583-24738681,24738764-24738997,24739104-24739178,
            24739299-24739386,24739478-24739638,24739734-24739841,
            24739934-24741922,24742007-24742279,24742957-24743295,
            24743449-24745038,24745166-24745241,24745333-24745412,
            24745614-24745679,24745761-24745830,24745899-24746134,
            24746149-24746319,24746915-24747097,24747176-24747241,
            24747326-24747389,24747472-24747530,24747612-24747699,
            24747799-24747891,24747956-24748116,24748215-24748307,
            24748405-24748518,24748654-24748773,24748852-24748935,
            24749016-24749171,24749518-24750154,24752874-24752929
          Length = 2815

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 25   AFVVLHICHKSNYLSKVAFLN*LSGILNR 111
            A  VLH+CH    L ++  LN  +G L R
Sbjct: 1670 AVSVLHLCHMGILLERITGLNAENGFLQR 1698


>09_03_0067 -
           12035991-12036389,12036928-12037071,12037917-12037946,
           12039881-12040159
          Length = 283

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +1

Query: 220 AGIITGHK-LANCRGYSGMWCISYF 291
           AG  + H+ ++NCR +  MW IS+F
Sbjct: 86  AGAASPHQAVSNCRTWGPMWYISFF 110


>01_06_1624 + 38725452-38725537,38725823-38725844,38726194-38728038
          Length = 650

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
 Frame = +1

Query: 127 WWIYLF*KRFNCVKYSLCG---GCKHPHIGSCIC 219
           W +Y    + NC  Y LCG    C    + SC C
Sbjct: 143 WVLYFSQPKANCGVYGLCGVNSKCSGSALSSCSC 176


>01_06_0509 - 29921224-29924589
          Length = 1121

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 124 VWWIYLF*KRFNCV-KYSLCGGCKHPHIGSCICAGIITGHKLANCRG 261
           V W+ L   R + V +++ C G ++  +   +  G + G  L++CRG
Sbjct: 200 VRWLDLALNRISGVPEFTNCSGLQYLDLSGNLIVGEVPGGALSDCRG 246


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,379,996
Number of Sequences: 37544
Number of extensions: 148749
Number of successful extensions: 283
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)