Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S13A01NGRL0001_A17
         (343 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97193-7|AAK68163.1|  299|Caenorhabditis elegans Yeast sir relat...    27   3.5  
Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical pr...    26   6.1  
AC006648-12|AAF39861.4|  418|Caenorhabditis elegans Btb and math...    26   6.1  
AL110484-10|CAB54401.1|  237|Caenorhabditis elegans Hypothetical...    26   8.1  

>U97193-7|AAK68163.1|  299|Caenorhabditis elegans Yeast sir related
           protein 2.4 protein.
          Length = 299

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 214 ICAGIITGHKLANCRGYSGMWCI 282
           I AG+ TG KL + RG  G+W +
Sbjct: 62  IGAGVSTGSKLPDFRGKQGVWTL 84


>Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical protein
            F36H2.3 protein.
          Length = 1388

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +1

Query: 205  GSCICAGIITGHKLANCRGYSGMWCISYFN--FIIGASWSYETSS 333
            GSC   G ITG   A C   +GMW  ++     +IG S + + S+
Sbjct: 1015 GSCTNGGAITGASTATCS--NGMWNPTFLGTCSLIGGSTTGQCSA 1057


>AC006648-12|AAF39861.4|  418|Caenorhabditis elegans Btb and math
           domain containingprotein 19 protein.
          Length = 418

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -1

Query: 145 RTSKSTTHNATFYLESHLTNLKMLLY*DNYFYDKYVEQQKL 23
           +++KST        E  L +LK+L    +YF D++V  Q +
Sbjct: 243 KSTKSTNRKLKIASEYRLDSLKVLATHTSYFKDRHVTLQNI 283


>AL110484-10|CAB54401.1|  237|Caenorhabditis elegans Hypothetical
           protein Y38E10A.10 protein.
          Length = 237

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = +1

Query: 205 GSCICAGIITGHKLANCRGYSGMWCISYFNFIIGASWSYETSSGYA 342
           G C+ A   T      C   +G+WC S F   I     YE S  ++
Sbjct: 137 GFCV-APTFTSFLAPTCNRVNGLWCASRFIKDINEETHYEGSKVFS 181


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,440,905
Number of Sequences: 27780
Number of extensions: 140890
Number of successful extensions: 271
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)