Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S13A01NGRL0001_A16
(392 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch... 27 1.0
SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch... 26 1.8
SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces po... 26 1.8
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 25 3.2
SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ... 25 4.2
SPBC337.16 |cho1||phosphatidyl-N-methylethanolamine N-methyltran... 25 5.5
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 25 5.5
SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar... 24 7.3
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 24 9.7
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 24 9.7
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 24 9.7
SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomy... 24 9.7
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo... 24 9.7
>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 815
Score = 27.1 bits (57), Expect = 1.0
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 392 PIKDCTSVDLQCRHHLPLSR 333
P K+C + L+C +H+P SR
Sbjct: 46 PCKNCKAGKLECTYHMPSSR 65
>SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 425
Score = 26.2 bits (55), Expect = 1.8
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +2
Query: 83 VAKAKSSATIQQELYQNLKHVCCYGLGACSFV 178
+ +K +AT++ + Q + H+ CYG+G +
Sbjct: 276 IYSSKFNATVEVKNKQEVLHMGCYGIGVSRLI 307
>SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 26.2 bits (55), Expect = 1.8
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 41 LAVALAVPTTQHHLVAKAKSSATIQQELYQNLKHVCCYGL 160
LA+AL P + HLV+ A + QE + H+ C GL
Sbjct: 181 LALALDDPNKKQHLVSFAWNCVRWIQENLLDENHIVCDGL 220
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 25.4 bits (53), Expect = 3.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 115 ARAISKSQARMLLRTWSLLFRLHPS 189
++A+ K A L+TW LLF+L P+
Sbjct: 702 SQALPKYVALERLKTWKLLFKLLPN 726
>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 388
Score = 25.0 bits (52), Expect = 4.2
Identities = 15/58 (25%), Positives = 24/58 (41%)
Frame = +3
Query: 141 TYAATDLEPALSSAPICCTNLPASKLTHIKKWGFHSMRIWTLIGRTLIIERSQT*KDS 314
T T L LS PIC + + + + + M +W + L + +T KDS
Sbjct: 138 TGKVTMLGRDLSDRPICYIQVHLHQPSKLTQNSLREMTVWVMETMRLFLRPQKTLKDS 195
>SPBC337.16 |cho1||phosphatidyl-N-methylethanolamine
N-methyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 221
Score = 24.6 bits (51), Expect = 5.5
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +2
Query: 38 LLAVALAVPTTQHHLVAKAKSSATIQQELYQNLKHVCCYGLGACSFVC---THLLYKSAG 208
+ AV++A+ ++ A+++ + +L CY L AC FV L+Y++A
Sbjct: 37 ICAVSIALNPLLWNIAARSEYNHKTLTKLANGDSKKACYMLAACIFVAGIVRDLIYQNAL 96
Query: 209 IQADTY*KMGVSLN 250
Q T +G+ +N
Sbjct: 97 KQQPT---LGIFMN 107
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 24.6 bits (51), Expect = 5.5
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Frame = +2
Query: 254 NLDIDRAHANYRAITNLKRQFPQLRV---FLTVGGDDDTEDPQKYNL 385
++ + AH + N RQFP L V F G D YNL
Sbjct: 950 SIALSTAHVQHGDTLNYSRQFPNLFVQGAFNRFGYDGSMPSKMSYNL 996
>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 424
Score = 24.2 bits (50), Expect = 7.3
Identities = 15/71 (21%), Positives = 31/71 (43%)
Frame = +2
Query: 95 KSSATIQQELYQNLKHVCCYGLGACSFVCTHLLYKSAGIQADTY*KMGVSLNENLDIDRA 274
KSS + ++ L+HV YGL S L + A++ K+ + + + +
Sbjct: 31 KSSENVPDKVNVKLQHVFHYGLNEDSISYYRLDVAKKSVYAESESKLPLKMKKGYSVHLK 90
Query: 275 HANYRAITNLK 307
+ A+T+ +
Sbjct: 91 DQSRDALTDYR 101
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 23.8 bits (49), Expect = 9.7
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +1
Query: 10 NHETLVASRAIGGSACGTNHP 72
NHE L+ G ++C T +P
Sbjct: 115 NHERLLFGAIAGAASCATTYP 135
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 23.8 bits (49), Expect = 9.7
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +3
Query: 201 LPASKLTHIKKWGFHSMRIW 260
+P S L ++++ HS RIW
Sbjct: 630 VPKSPLLTLERYAMHSKRIW 649
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 23.8 bits (49), Expect = 9.7
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 28 ASRAIGGSACGTNHPASPSSQSKVLCYYTARAISKSQA 141
+S + S+ ++ PAS SS S L + + + SKS +
Sbjct: 379 SSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKSSS 416
>SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 427
Score = 23.8 bits (49), Expect = 9.7
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +2
Query: 251 ENLDIDRAHANYRAITNLKRQFPQLRVFLTVGGDDDTE 364
E++D A+T +KR + +F T +DD+E
Sbjct: 120 EHIDFFTDGGYMEALTRIKRNYGVALLFFTSSKNDDSE 157
>SPAC26H5.07c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 505
Score = 23.8 bits (49), Expect = 9.7
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +1
Query: 79 PSSQSKVLCYYTARAISKSQARMLLRTWSLLF 174
P QS + C +TA S+A + TW F
Sbjct: 139 PVEQSGLYCVFTAPLEGSSEAYKITVTWENYF 170
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,645,112
Number of Sequences: 5004
Number of extensions: 30187
Number of successful extensions: 88
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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