Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S13A01NGRL0001_A16
(392 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0843 - 8276619-8278991 29 1.0
08_01_0822 + 7976216-7978498,7978612-7978698,7979052-7979195 28 2.3
02_05_1019 - 33549576-33550247,33550885-33551121,33551206-335513... 28 2.3
01_03_0136 - 12897284-12897399,12897679-12897727,12898563-128986... 28 2.3
11_01_0117 + 906419-906524,907531-907667,907948-908055,909649-90... 28 3.1
02_04_0318 - 21999640-21999705,21999706-21999768,21999822-219998... 28 3.1
04_04_1630 - 34896021-34896143,34896329-34896403,34896500-348965... 27 4.1
12_02_0918 - 24299620-24299748,24299890-24300037,24303105-243032... 27 5.4
02_04_0078 + 19507705-19508169 27 5.4
12_02_1083 - 25922670-25922867,25922962-25923213,25923674-259238... 27 7.1
10_02_0002 - 4018145-4018545,4018563-4018605 27 7.1
07_03_0973 + 23053441-23054295 26 9.4
06_01_0510 + 3681369-3681645,3682825-3682886,3683016-3683165,368... 26 9.4
>08_01_0843 - 8276619-8278991
Length = 790
Score = 29.5 bits (63), Expect = 1.0
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = -3
Query: 123 SSC-CIVAEDFALA---TR*CWVVGTASATANSPRGDQGFM 13
+SC C+ +F A T+ CW T T NSP GD G +
Sbjct: 314 TSCSCLPGFEFLSANQSTQGCWRAQTGGCTGNSPNGDIGLV 354
>08_01_0822 + 7976216-7978498,7978612-7978698,7979052-7979195
Length = 837
Score = 28.3 bits (60), Expect = 2.3
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Frame = -3
Query: 123 SSC-CIVAEDFALA---TR*CWVVGTASATANSPRGDQG 19
+SC C+ +F+ A T+ CW V T T NS GD G
Sbjct: 314 TSCSCLPGFEFSSANQTTQGCWRVRTGGCTGNSSNGDIG 352
>02_05_1019 -
33549576-33550247,33550885-33551121,33551206-33551317,
33551998-33552215,33553084-33553194
Length = 449
Score = 28.3 bits (60), Expect = 2.3
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = +2
Query: 5 LIIMKPWSPRGLLAVALAVPTTQHH-LVAK-AKSSATIQQELYQNLKHVCCYG 157
LI++ + PR L L + +VAK A A LY HVCCYG
Sbjct: 61 LIVLAQYFPRLYLIFPLTYEIVKTTGVVAKTAWQGAAYNMLLYMIASHVCCYG 113
>01_03_0136 -
12897284-12897399,12897679-12897727,12898563-12898661,
12898781-12898886,12899209-12899304,12899394-12899542,
12899629-12899904,12900229-12900317,12900921-12901013,
12901110-12901205,12901337-12901444,12901703-12901895,
12902608-12902639,12902997-12903066
Length = 523
Score = 28.3 bits (60), Expect = 2.3
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 80 LVAKAKSSATIQQELYQNLKHVCCYGLGACSFVCTHLL 193
LV A S + I +LY+++ +VC + L S C H++
Sbjct: 242 LVEFAWSHSVISDQLYKHVNNVCDFRLSPRSNECNHVM 279
>11_01_0117 +
906419-906524,907531-907667,907948-908055,909649-909750,
909946-910033,910326-910560,910625-910715
Length = 288
Score = 27.9 bits (59), Expect = 3.1
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +2
Query: 20 PWSPRGLLAVA---LAVPTTQHHLVAKAKSSATIQQELYQNLKHVCC 151
P PR LLAVA LA P + + ++A + +I+ EL+ K CC
Sbjct: 225 PRDPRCLLAVAATDLAAPHGEAAVDSEAGAGRSIRAELFLMEKTCCC 271
>02_04_0318 -
21999640-21999705,21999706-21999768,21999822-21999884,
21999938-22000000,22001097-22001141,22001914-22002325,
22003313-22003475,22004086-22004132,22004458-22004564,
22004651-22004684,22004754-22004807,22005599-22005723
Length = 413
Score = 27.9 bits (59), Expect = 3.1
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +1
Query: 103 CYYTARAISKSQARMLLRTWSLLFRLHPSAVQIC 204
CYY + R+ L +W + L+P Q+C
Sbjct: 361 CYYFLNPLPYQAIRLFLPSWHCYYFLNPLPCQVC 394
>04_04_1630 - 34896021-34896143,34896329-34896403,34896500-34896556,
34897176-34897352,34897426-34897492,34898043-34898101,
34898188-34898241,34898455-34898604,34898709-34898918,
34898980-34899039,34899399-34899527,34899616-34899720,
34899935-34900024,34900630-34900695,34901047-34901115,
34901348-34901467,34901572-34901634,34901681-34901817,
34902070-34902160,34902298-34902463,34902700-34904172,
34905666-34905940,34906322-34906819,34906996-34907145,
34907840-34907911,34908006-34908266,34908478-34908558,
34908745-34908996,34909323-34909382,34909602-34909853,
34910385-34910549,34910589-34910849,34911267-34912307,
34913398-34913457,34914055-34914165,34914448-34914534,
34915227-34915300,34915397-34915490,34915644-34915689,
34916397-34916521
Length = 2501
Score = 27.5 bits (58), Expect = 4.1
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 257 LDIDRAHANYRAITNLKRQFPQLRVFL 337
+ +D ANYRA+ L + FP ++ F+
Sbjct: 2373 ITLDTPGANYRAVWALSKYFPNVKTFV 2399
>12_02_0918 -
24299620-24299748,24299890-24300037,24303105-24303280,
24305870-24305917,24306005-24306116,24306209-24306468
Length = 290
Score = 27.1 bits (57), Expect = 5.4
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 269 RAHANYRAITNLKRQFPQLRVFLTVGGDDDTEDPQK 376
RAH + + R+ RV VGG DD ED ++
Sbjct: 109 RAHPSLHVLVGWARRMIGFRVSTPVGGCDDEEDGRR 144
>02_04_0078 + 19507705-19508169
Length = 154
Score = 27.1 bits (57), Expect = 5.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 37 AIGGSACGTNHPASPSSQS 93
A SAC HP+SPSS S
Sbjct: 50 AAAASACPATHPSSPSSSS 68
>12_02_1083 -
25922670-25922867,25922962-25923213,25923674-25923856,
25923945-25924015,25924058-25924169,25924524-25924583,
25924665-25924780,25925172-25925244
Length = 354
Score = 26.6 bits (56), Expect = 7.1
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = +2
Query: 83 VAKAKSSATIQQELYQNLKHVCC 151
++ +S T+Q ++NLK++CC
Sbjct: 324 ISNRMASVTLQDGAFENLKNLCC 346
>10_02_0002 - 4018145-4018545,4018563-4018605
Length = 147
Score = 26.6 bits (56), Expect = 7.1
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 266 DRAHANYRAITNLKRQFPQLRVFLTVGGDDDTEDPQK 376
DRA A+YR + + + G DDD DP++
Sbjct: 111 DRAVADYRNVARVWTRVVSFGTTRGFGSDDDPSDPER 147
>07_03_0973 + 23053441-23054295
Length = 284
Score = 26.2 bits (55), Expect = 9.4
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 67 HPASPSSQSKVLCYYTARAISKSQARMLLRTWS 165
H +SP Q+ V C Y AR KS + + TWS
Sbjct: 17 HSSSPGGQNMVQCTYLARLRGKSCS--VTVTWS 47
>06_01_0510 +
3681369-3681645,3682825-3682886,3683016-3683165,
3683776-3683952,3684496-3684711,3684802-3686480,
3686602-3686667,3686753-3686822,3686909-3687547
Length = 1111
Score = 26.2 bits (55), Expect = 9.4
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 150 ATDLEPALSSAPICCTNLPASKLTHIKKWGFH 245
A+DLE +L S + + P K+ +K WG++
Sbjct: 225 ASDLEHSLLSCMLNMIHDPVKKVQAVKSWGWY 256
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,434,489
Number of Sequences: 37544
Number of extensions: 217140
Number of successful extensions: 672
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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