Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S13A01NGRL0001_A16
(392 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U61958-2|AAB03182.3| 1067|Caenorhabditis elegans Hypothetical pr... 30 0.68
U58742-4|AAB36856.1| 242|Caenorhabditis elegans Activated in bl... 29 1.6
Z70035-12|CAB76726.1| 150|Caenorhabditis elegans Hypothetical p... 28 2.7
Z70035-8|CAA93868.2| 446|Caenorhabditis elegans Hypothetical pr... 27 3.6
Z70035-6|CAA93866.1| 444|Caenorhabditis elegans Hypothetical pr... 27 3.6
Z92833-7|CAB07381.1| 825|Caenorhabditis elegans Hypothetical pr... 27 4.8
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 27 4.8
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 27 4.8
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 27 4.8
AL023842-9|CAA19521.1| 825|Caenorhabditis elegans Hypothetical ... 27 4.8
AC006809-3|AAY86286.1| 558|Caenorhabditis elegans Hypothetical ... 27 6.3
Z70035-7|CAA93867.1| 369|Caenorhabditis elegans Hypothetical pr... 26 8.4
U88171-2|AAB42252.1| 434|Caenorhabditis elegans Glutamate-gated... 26 8.4
U14525-1|AAA50786.1| 434|Caenorhabditis elegans avermectin-sens... 26 8.4
>U61958-2|AAB03182.3| 1067|Caenorhabditis elegans Hypothetical
protein C25A8.4 protein.
Length = 1067
Score = 29.9 bits (64), Expect = 0.68
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = +2
Query: 179 CTHLLYKSAGIQADT-Y*KMGVS-LNENLDIDRAHANYRAITNLKRQFPQLRVFLTVGGD 352
CTHL+Y S I DT Y + VS + DID N R L++ P ++ + V
Sbjct: 51 CTHLVYGSIPIDRDTGYPQYSVSDVESGYDID----NIRTFMRLRKYHPNAKLLMGVVRT 106
Query: 353 DDTED 367
ED
Sbjct: 107 KPFED 111
>U58742-4|AAB36856.1| 242|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 3 protein.
Length = 242
Score = 28.7 bits (61), Expect = 1.6
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -1
Query: 236 PFFNMCQLGCRQICTADGCRRKSRL 162
PF N CQ C+Q C C + L
Sbjct: 35 PFVNQCQSSCQQNCQTSSCSASATL 59
>Z70035-12|CAB76726.1| 150|Caenorhabditis elegans Hypothetical
protein R09D1.14 protein.
Length = 150
Score = 27.9 bits (59), Expect = 2.7
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Frame = +2
Query: 233 MGVSLNENLDIDRAHANYRAITNL----KRQFPQLRVFLTVGGDDDTED 367
+ ++ + L ID A R TNL K+Q PQ++V +++GG+D++ +
Sbjct: 73 VNITSDGQLQIDGDLAKNR-FTNLIEIAKQQTPQVKVMISIGGNDNSNN 120
>Z70035-8|CAA93868.2| 446|Caenorhabditis elegans Hypothetical
protein R09D1.8 protein.
Length = 446
Score = 27.5 bits (58), Expect = 3.6
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 4/42 (9%)
Frame = +2
Query: 254 NLDIDRAHANYRAITNL----KRQFPQLRVFLTVGGDDDTED 367
+L ID A R TNL K+Q PQ++V +++GG+D++ +
Sbjct: 122 HLQIDGDLAKNR-FTNLIEIAKQQTPQVKVMISIGGNDNSNN 162
>Z70035-6|CAA93866.1| 444|Caenorhabditis elegans Hypothetical
protein R09D1.6 protein.
Length = 444
Score = 27.5 bits (58), Expect = 3.6
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 4/42 (9%)
Frame = +2
Query: 254 NLDIDRAHANYRAITNL----KRQFPQLRVFLTVGGDDDTED 367
+L ID A R TNL K+Q PQ++V +++GG+D++ +
Sbjct: 120 HLQIDGDLAKNR-FTNLIEIAKQQTPQVKVMISIGGNDNSNN 160
>Z92833-7|CAB07381.1| 825|Caenorhabditis elegans Hypothetical
protein F38A6.3b protein.
Length = 825
Score = 27.1 bits (57), Expect = 4.8
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 13 HETLVASRAIGGSACGTNHPASPSSQSKVLCYYTARAISKS 135
H + A G S CG N P S S +S + Y AR++ +S
Sbjct: 606 HSANYSPLAEGISQCGLNSPPSCSIKSGQVVYGDARSMGRS 646
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 27.1 bits (57), Expect = 4.8
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +2
Query: 248 NENLDIDRAHANYRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNL 385
N D+D AH + R++ + + Q+ R L + D KY L
Sbjct: 1780 NLRTDLDNAHTDIRSLRDKEEQWDSSRFQLETKMRESDSDTNKYQL 1825
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 27.1 bits (57), Expect = 4.8
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +2
Query: 248 NENLDIDRAHANYRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNL 385
N D+D AH + R++ + + Q+ R L + D KY L
Sbjct: 1853 NLRTDLDNAHTDIRSLRDKEEQWDSSRFQLETKMRESDSDTNKYQL 1898
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 27.1 bits (57), Expect = 4.8
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +2
Query: 248 NENLDIDRAHANYRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNL 385
N D+D AH + R++ + + Q+ R L + D KY L
Sbjct: 1853 NLRTDLDNAHTDIRSLRDKEEQWDSSRFQLETKMRESDSDTNKYQL 1898
>AL023842-9|CAA19521.1| 825|Caenorhabditis elegans Hypothetical
protein F38A6.3b protein.
Length = 825
Score = 27.1 bits (57), Expect = 4.8
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 13 HETLVASRAIGGSACGTNHPASPSSQSKVLCYYTARAISKS 135
H + A G S CG N P S S +S + Y AR++ +S
Sbjct: 606 HSANYSPLAEGISQCGLNSPPSCSIKSGQVVYGDARSMGRS 646
>AC006809-3|AAY86286.1| 558|Caenorhabditis elegans Hypothetical
protein Y5H2A.4 protein.
Length = 558
Score = 26.6 bits (56), Expect = 6.3
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = -1
Query: 236 PFFNMCQLGCRQICTADGC 180
PF N CQ C+Q C C
Sbjct: 120 PFVNECQSQCQQSCQTSSC 138
>Z70035-7|CAA93867.1| 369|Caenorhabditis elegans Hypothetical
protein R09D1.7 protein.
Length = 369
Score = 26.2 bits (55), Expect = 8.4
Identities = 8/21 (38%), Positives = 17/21 (80%)
Frame = +2
Query: 305 KRQFPQLRVFLTVGGDDDTED 367
K+Q P ++V +++GGDD++ +
Sbjct: 65 KQQTPPVKVMISIGGDDNSNN 85
>U88171-2|AAB42252.1| 434|Caenorhabditis elegans Glutamate-gated
chloride channelprotein 2 protein.
Length = 434
Score = 26.2 bits (55), Expect = 8.4
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -2
Query: 376 LLWIFSVVITSHCQEHAQLRKLSFQVCDRSIISVRPINVQILIE*NP 236
+L+ + +TS C QL L +Q C+ ++S I+ E +P
Sbjct: 149 ILYSSRISLTSSCPMRLQLYPLDYQSCNFDLVSYAHTMNDIMYEWDP 195
>U14525-1|AAA50786.1| 434|Caenorhabditis elegans
avermectin-sensitive glutamate-gated chloride channel
GluCl beta protein.
Length = 434
Score = 26.2 bits (55), Expect = 8.4
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -2
Query: 376 LLWIFSVVITSHCQEHAQLRKLSFQVCDRSIISVRPINVQILIE*NP 236
+L+ + +TS C QL L +Q C+ ++S I+ E +P
Sbjct: 149 ILYSSRISLTSSCPMRLQLYPLDYQSCNFDLVSYAHTMNDIMYEWDP 195
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,273,403
Number of Sequences: 27780
Number of extensions: 174849
Number of successful extensions: 494
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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