Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S13A01NGRL0001_A16
         (392 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   3.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   5.1  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    21   6.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   6.7  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    21   6.7  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 213 KLTHIKKWGFHSMRIWTLIGRTLIIERS 296
           +LT I KW  H M+   +I   L++E +
Sbjct: 272 ELTKIDKWFLHKMK--NIIDYYLVLENT 297


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +2

Query: 107  TIQQELYQNLKHV 145
            T+ +++YQ LKH+
Sbjct: 1076 TMAEDVYQTLKHI 1088


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 251 ENLDIDRAHANYRAITN 301
           +++DIDR   N R +TN
Sbjct: 26  DDMDIDRILQNGRILTN 42


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -3

Query: 249 LSETPIF*YVSAWMPADLYSRWVQ 178
           L  T IF   S W      S+WVQ
Sbjct: 487 LKNTEIFKDKSDWFDYSEVSKWVQ 510


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 251 ENLDIDRAHANYRAITN 301
           +++DIDR   N R +TN
Sbjct: 26  DDMDIDRILQNGRILTN 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,211
Number of Sequences: 438
Number of extensions: 2069
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9638226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)