Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S13A01NGRL0001_A15
         (191 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    24   2.4  
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    23   4.2  
SPBC1539.01c |||mitochondrial ribosomal protein subunit L15|Schi...    22   9.8  

>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 191 EVRQRRGCSHCIRRIARYTCPETKLSL*THIQLSLL 84
           +V +R  C +C R+I +  C E  + +   +QL L+
Sbjct: 83  QVSRRDTCFYCSRKIIKCICNEEHVGI-ESVQLKLI 117


>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 188 VRQRRGCSHCIRRIARYTCPETKLS 114
           V + R C H   + A+YTCPE  L+
Sbjct: 796 VLKSRACKH---KEAKYTCPEIFLN 817


>SPBC1539.01c |||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 164 HCIRRIARYTCPETK 120
           +C+RRI +  C E K
Sbjct: 25  NCVRRIGKIACNENK 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 653,340
Number of Sequences: 5004
Number of extensions: 7763
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 2,362,478
effective HSP length: 43
effective length of database: 2,147,306
effective search space used: 42946120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)