Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S13A01NGRL0001_A14
(488 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 30 0.22
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha... 29 0.50
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 2.0
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 26 2.7
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 2.7
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 25 4.6
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha... 25 6.1
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual 25 6.1
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc... 25 6.1
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 25 6.1
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 29.9 bits (64), Expect = 0.22
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 109 GNLSTGRSITLLSAKMKDPWYS*DRKRLTRANTNASLK 222
G+L G LL + PWY D R+TRA L+
Sbjct: 458 GDLHNGHYYALLKTEKDGPWYKYDDTRVTRATLREVLE 495
>SPAC57A10.02 |cdr2||GIN4 family protein kinase
Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 28.7 bits (61), Expect = 0.50
Identities = 23/88 (26%), Positives = 38/88 (43%)
Frame = +3
Query: 69 GNDQGVKYSWQKDGKSFNWQEHNAALRKDEGSLVFLRPQASDEGQYQCFAETPAGVASSR 248
GN+Q +S D ++N NA + LR + + +++PA S
Sbjct: 543 GNEQ---FSNNIDNNNYNQPYANATMNNSRR----LRTPSGERSMRADLSQSPASYDSLN 595
Query: 249 VISFRKTYLIASPAKTHEKTPIEGRPFQ 332
V R+ + SP+ T +K + G PFQ
Sbjct: 596 VPKHRRRQSLFSPSSTKKK--LSGSPFQ 621
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.6 bits (56), Expect = 2.0
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 22 RGKENNPTCPQNVSSKETIRESSTPGKR 105
+G NN T PQN SKE+++ + ++
Sbjct: 1592 KGINNNQTSPQNKPSKESLKSDTISNEK 1619
>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 905
Score = 26.2 bits (55), Expect = 2.7
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +3
Query: 378 WKKR--LSGADPNADVTDFDRRITAGPDGN 461
WK+ ++ +PNA +T F+R + DGN
Sbjct: 458 WKRTDDIASGEPNAILTSFNRNFRSRNDGN 487
>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 684
Score = 26.2 bits (55), Expect = 2.7
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = +3
Query: 12 GVWPRQGEQPNVSSECLIEGNDQGVKYSWQKD 107
G+ R+G + N + +E N +K+ W D
Sbjct: 133 GIPKREGRKTNPVHDKAVENNSDFIKFDWNSD 164
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 25.4 bits (53), Expect = 4.6
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3
Query: 375 TWKKRLSGADPNADV 419
TW+KRL G N DV
Sbjct: 1468 TWRKRLEGCQKNVDV 1482
>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
Wis1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 605
Score = 25.0 bits (52), Expect = 6.1
Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 1/78 (1%)
Frame = +1
Query: 19 GRGKENNPTCPQNVSSKETIRESSTPGKRMGNLSTGRSITLLSAKMKDPWYS*DRKRLTR 198
G ++ + P + + P R+G ++ RS L+ MKDP R T
Sbjct: 62 GSDNDSKVSSPSREIPSDPPLPRAVPTVRLGRSTSSRSRNSLNLDMKDPSEKPRRSLPTA 121
Query: 199 A-NTNASLKPQPVLPARG 249
A N P P P G
Sbjct: 122 AGQNNIGSPPTPPGPFPG 139
>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 25.0 bits (52), Expect = 6.1
Identities = 27/124 (21%), Positives = 50/124 (40%), Gaps = 1/124 (0%)
Frame = -1
Query: 482 SDDCEVEVSIRPSCDAAIKVSHISVRISSGQTFLPSNQGFRVSVRLHTVQLERPAFDWRF 303
SD V VSI P+ + I+V +S+ + TF+ + + + ++ E D +
Sbjct: 305 SDLVSVFVSIMPNNGSKIRVQQLSLSLVEYITFIHPSSSSPIVRKKKVLRYEEDLDDMKL 364
Query: 302 LVCLRWRCDEVSLPEADHPRAGNTGW-GFSEXXXXXXXXXXRSQEYQGSFIFAESSVMLL 126
+ P+ D A TG+ S+ + Q Y+ I + +++
Sbjct: 365 TSEGLSKSLSKPFPDIDFEDANITGFTTTSDLYSVQYMLVIKVQLYRARNIEITNPIIVS 424
Query: 125 PVER 114
PVER
Sbjct: 425 PVER 428
>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 25.0 bits (52), Expect = 6.1
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 281 IASEDTRENANRRQAFPIGLCAAERL 358
I + DT A RRQ F L AAER+
Sbjct: 474 IFNNDTLSRAERRQRFRQSLRAAERI 499
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 25.0 bits (52), Expect = 6.1
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +3
Query: 255 SFRKTYLIASPAKTHEKTP 311
+FRKTYL AS A H P
Sbjct: 585 AFRKTYLFASNAGIHINAP 603
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,136,508
Number of Sequences: 5004
Number of extensions: 44922
Number of successful extensions: 142
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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