Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S13A01NGRL0001_A14
(488 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0915 + 28755584-28756139,28756695-28756846,28756994-287569... 31 0.38
10_01_0039 + 447573-448911,451247-451296,451322-451423 30 1.1
02_03_0388 + 18429538-18430598,18430971-18431081,18431165-184312... 29 1.5
02_05_0854 - 32267047-32267298,32267383-32268194,32268289-322684... 29 2.6
02_05_0853 + 32261705-32261794,32261895-32262027,32262117-322629... 29 2.6
01_03_0269 + 14442886-14442978,14443306-14443377,14443551-144440... 29 2.6
10_01_0037 + 434995-436299 28 3.5
09_06_0216 + 21627238-21627834 28 3.5
08_01_0422 + 3737429-3738006,3738083-3738824 28 3.5
07_03_1651 - 28395369-28395436,28395524-28395575,28395857-283960... 28 4.6
06_01_1090 - 8945909-8946125,8946607-8947562,8947733-8949835 28 4.6
04_04_0532 + 26058100-26058229,26058355-26058559,26058678-260591... 28 4.6
11_06_0578 + 25176304-25176388,25176503-25177032,25177267-251779... 27 6.1
11_03_0153 + 10834388-10834813,10835731-10836012,10836153-108363... 27 6.1
08_02_0141 - 13112399-13112514,13112898-13112994,13113113-13113430 27 6.1
08_01_0822 + 7976216-7978498,7978612-7978698,7979052-7979195 27 6.1
06_03_0987 - 26589277-26589420,26589620-26589774,26589845-26589890 27 6.1
05_05_0299 - 23930657-23932627 27 8.1
04_04_0144 - 23095172-23095830,23095915-23097265 27 8.1
03_06_0042 + 31247084-31247641,31248396-31248482,31248684-312487... 27 8.1
02_04_0217 + 20992238-20992397,20992488-20992792,20992910-209930... 27 8.1
>03_05_0915 +
28755584-28756139,28756695-28756846,28756994-28756996,
28757587-28757690,28758033-28758121,28758682-28758825,
28759194-28759291,28759380-28759502,28760045-28760113,
28760206-28760406
Length = 512
Score = 31.5 bits (68), Expect = 0.38
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 171 FLRPQASDEGQYQCFAETPAGVASSRVIS 257
FLRP A+D Y CF GVAS ++I+
Sbjct: 274 FLRPNAADLSDYGCFVVLALGVASLQMIA 302
>10_01_0039 + 447573-448911,451247-451296,451322-451423
Length = 496
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -1
Query: 350 RLHTVQLERPAFDWRFLVCLRWRCDEVSLPEADHPR 243
RL +L R D++ L WRC +LP A H R
Sbjct: 259 RLLPARLGRRCTDFQLLAATLWRCRTAALPYAPHRR 294
>02_03_0388 +
18429538-18430598,18430971-18431081,18431165-18431237,
18431513-18431695
Length = 475
Score = 29.5 bits (63), Expect = 1.5
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +3
Query: 21 PRQGEQPNVSSECLIEGNDQGVKYSWQKDGKSFNWQEHNAALRKDEGSLVF 173
P+ GEQPN E L+ G D G++ G + + A + K E ++
Sbjct: 225 PQLGEQPNQEIEPLVTGEDFGIQEFINDTGLTVDQLLRGAPIEKAEAKYMY 275
>02_05_0854 -
32267047-32267298,32267383-32268194,32268289-32268421,
32268530-32268619
Length = 428
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +3
Query: 351 NAYPKPLITWKKRLSGADPNADVTDFDRR--ITAGPDGNLY 467
NA+ + L+ W R+ GA+ NA DF + + +G L+
Sbjct: 246 NAHRQELVNWVDRVGGANSNATAFDFTTKGILNVAVEGELW 286
>02_05_0853 +
32261705-32261794,32261895-32262027,32262117-32262928,
32263020-32263271
Length = 428
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +3
Query: 351 NAYPKPLITWKKRLSGADPNADVTDFDRR--ITAGPDGNLY 467
NA+ + L+ W R+ GA+ NA DF + + +G L+
Sbjct: 246 NAHRQELVNWVDRVGGANSNATTFDFTTKGILNVAVEGELW 286
>01_03_0269 +
14442886-14442978,14443306-14443377,14443551-14444045,
14444134-14444253
Length = 259
Score = 28.7 bits (61), Expect = 2.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 351 NAYPKPLITWKKRLSGADPNADVTDF 428
NA+ + L+ W R+ GA+ NA DF
Sbjct: 123 NAHRQELVNWVNRVGGANSNATAFDF 148
>10_01_0037 + 434995-436299
Length = 434
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -1
Query: 350 RLHTVQLERPAFDWRFLVCLRWRCDEVSLPEADHPR 243
RL L R D++ L WRC +LP A H R
Sbjct: 258 RLLPAPLGRRCTDFQLLPAALWRCRTAALPYAPHRR 293
>09_06_0216 + 21627238-21627834
Length = 198
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 59 SHRRKRSGSQVLLAKGWEIFQLAG 130
SH RKR+ +Q +LAK ++F AG
Sbjct: 108 SHYRKRAAAQDVLAKAQDVFNQAG 131
>08_01_0422 + 3737429-3738006,3738083-3738824
Length = 439
Score = 28.3 bits (60), Expect = 3.5
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +3
Query: 93 SWQKDGKSFNWQEHNAALRKDEGSLVFLRPQASDEGQYQCF--AETP 227
SWQ G+ W++ A R+D V LR + +GQ C AETP
Sbjct: 282 SWQPWGRLEAWRDQGGAARQD---TVCLRLRLLPDGQDACMLVAETP 325
>07_03_1651 -
28395369-28395436,28395524-28395575,28395857-28396092,
28396362-28396419,28396509-28396577,28396686-28396791,
28397104-28397171,28397266-28397385,28398144-28398231,
28399433-28399534,28399699-28399757,28399866-28400003,
28400222-28400473,28400508-28400593,28401061-28401165,
28402351-28402516
Length = 590
Score = 27.9 bits (59), Expect = 4.6
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 5 HNRGLAEARRTTQRVLRMSHRRKRSGSQVLLAKG 106
H R L R +R R H+R R Q+L AKG
Sbjct: 345 HGRRLDYEERKRKRAAREVHKRSRDARQLLGAKG 378
>06_01_1090 - 8945909-8946125,8946607-8947562,8947733-8949835
Length = 1091
Score = 27.9 bits (59), Expect = 4.6
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 160 PSSLRRAALCSCQLKDFPSFCQ 95
P SLRR ++ +C+ DFP++ Q
Sbjct: 911 PPSLRRLSIVNCRKLDFPAYLQ 932
>04_04_0532 +
26058100-26058229,26058355-26058559,26058678-26059157,
26059262-26059354,26059526-26059636,26059720-26059792,
26060072-26060208,26061040-26061097
Length = 428
Score = 27.9 bits (59), Expect = 4.6
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +3
Query: 21 PRQGEQPNVSSECLIEGNDQGVKYSWQKDGKSFNWQEHNAALRKDE 158
P+ GEQPN E L+ G D G++ G + + A + K E
Sbjct: 143 PQLGEQPNQEIEPLVTGEDFGIQEFINDTGLTTDQLLRGAPIEKAE 188
>11_06_0578 +
25176304-25176388,25176503-25177032,25177267-25177997,
25178122-25178172,25178562-25178813,25178894-25179004,
25179102-25179183,25179460-25179489
Length = 623
Score = 27.5 bits (58), Expect = 6.1
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 108 GKSFNWQEHNAALRKDEGSLVFLRPQASDEGQYQCFAETP 227
GK++ W + + DEG ++F P +E Y AE P
Sbjct: 178 GKNWVWARNTDQV-SDEGDILFETPDIEEEHFYSLAAENP 216
>11_03_0153 +
10834388-10834813,10835731-10836012,10836153-10836322,
10836431-10836528,10836770-10838133
Length = 779
Score = 27.5 bits (58), Expect = 6.1
Identities = 20/73 (27%), Positives = 29/73 (39%)
Frame = +1
Query: 10 PGFGRGKENNPTCPQNVSSKETIRESSTPGKRMGNLSTGRSITLLSAKMKDPWYS*DRKR 189
P +GRG+E P S G + NL T ++A + W K
Sbjct: 173 PRWGRGQETPGEDPATASKYGAAFVKGLQGSSLTNLQTSACCKHITAYDIEEW-----KG 227
Query: 190 LTRANTNASLKPQ 228
++R N NA + PQ
Sbjct: 228 VSRYNFNAKVTPQ 240
>08_02_0141 - 13112399-13112514,13112898-13112994,13113113-13113430
Length = 176
Score = 27.5 bits (58), Expect = 6.1
Identities = 18/41 (43%), Positives = 22/41 (53%)
Frame = +1
Query: 211 ASLKPQPVLPARG*SASGRLTSSHRQRRHTRKRQSKAGLSN 333
ASL P+PVLPA +A+ +SS R R S G SN
Sbjct: 2 ASLLPRPVLPA---AAAASTSSSSRCRYRITTSSSARGWSN 39
>08_01_0822 + 7976216-7978498,7978612-7978698,7979052-7979195
Length = 837
Score = 27.5 bits (58), Expect = 6.1
Identities = 8/30 (26%), Positives = 18/30 (60%)
Frame = -2
Query: 133 CSCQLKDFPSFCQEYLTP*SFPSMRHSEDT 44
C+C++ F ++C + + P + + HS +T
Sbjct: 390 CACEIAMFDTYCSKQMLPMRYGKIDHSSNT 419
>06_03_0987 - 26589277-26589420,26589620-26589774,26589845-26589890
Length = 114
Score = 27.5 bits (58), Expect = 6.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 275 EVSLPEADHPRAGNTGWGF 219
EV LP + PR G+ WGF
Sbjct: 24 EVQLPRGNDPRGGSYPWGF 42
>05_05_0299 - 23930657-23932627
Length = 656
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 211 ASLKPQPVLPARG*SASGRLTSSHRQRRHTRKRQSK 318
AS +P+ LP A G+ S+ +RR R+R+ K
Sbjct: 601 ASSEPEKELPNEQGDADGKAKSTRSERRKRRRRELK 636
>04_04_0144 - 23095172-23095830,23095915-23097265
Length = 669
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 225 PAGVASSRVISFRKTYLIASPAKTHEKTPI 314
PAG SSRV +R ++A P + +K +
Sbjct: 518 PAGAPSSRVAGYRAPEVVADPWRLSQKADV 547
>03_06_0042 +
31247084-31247641,31248396-31248482,31248684-31248779,
31248897-31248998,31249455-31249541,31249692-31249759,
31249879-31249963
Length = 360
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 234 VASSRVISFRKTYLIASPAKTHEKTPIEGRPFQL-DCVQPNAY 359
V SSR +R L+AS ++ P EG+ + + D P A+
Sbjct: 57 VISSRGFPYRSLRLLASERSAGKRLPFEGQEYTVQDLAAPGAF 99
>02_04_0217 +
20992238-20992397,20992488-20992792,20992910-20993038,
20993476-20993631
Length = 249
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +1
Query: 259 SGRLTSSHRQRRHTRKR-QSKAGLSNWTVC 345
S LTSS RR RKR S +NW +C
Sbjct: 134 SSNLTSSSSNRRSHRKRGHSSMESNNWVLC 163
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,678,938
Number of Sequences: 37544
Number of extensions: 327275
Number of successful extensions: 1052
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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