Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S13A01NGRL0001_A13
         (367 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0439 + 24319464-24320102                                         28   2.0  
05_04_0389 - 20845490-20845600,20845697-20846006,20846097-208462...    27   4.5  

>03_05_0439 + 24319464-24320102
          Length = 212

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 102 KHLIDIANLPTKRGDYGNPLWG*PMSSSGRLM 7
           K L  +A     R  YG PLWG P  ++GR++
Sbjct: 79  KWLPFVAGGAAGRYPYGRPLWGLPAPAAGRMV 110


>05_04_0389 -
           20845490-20845600,20845697-20846006,20846097-20846242,
           20846319-20846426,20846508-20846615,20846997-20847109,
           20847340-20847437,20847530-20847714,20847811-20847953,
           20848293-20848377,20848486-20848624,20848686-20848780,
           20848894-20849037,20849114-20849206,20849310-20849376,
           20849529-20849641,20849750-20849845,20853885-20854058
          Length = 775

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 131 CRVVSAKNITNTSLISPICLPSVAIMATPYGGDLCPAV 18
           C   S++++   S I      S+ +MA  +GGD CP +
Sbjct: 728 CHAESSESVVKQSCIGRRGC-SIPVMAAKFGGDPCPGI 764


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,702,714
Number of Sequences: 37544
Number of extensions: 174150
Number of successful extensions: 228
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)