Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S13A01NGRL0001_A13
         (367 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23516-1|AAL11101.1|  464|Caenorhabditis elegans Hypothetical pr...    27   4.1  
AF016681-18|AAO91734.1|  330|Caenorhabditis elegans Serpentine r...    27   4.1  
AF016677-4|AAL11109.2|  304|Caenorhabditis elegans Hypothetical ...    27   4.1  
U41533-13|AAA83174.3|  955|Caenorhabditis elegans Hypothetical p...    26   7.2  
Z81047-2|CAB02828.1|  376|Caenorhabditis elegans Hypothetical pr...    26   9.5  

>U23516-1|AAL11101.1|  464|Caenorhabditis elegans Hypothetical
           protein B0416.5b protein.
          Length = 464

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -3

Query: 164 NY-NIFTNIYTVCRVVSAKNITNTSLISPICLPSVAIMATPY 42
           NY N F  I  V RV+S+ +     L  PIC+    I A  Y
Sbjct: 71  NYVNSFYGIGAVIRVISSLDFVPQDLRFPICMTGQGIAAIAY 112


>AF016681-18|AAO91734.1|  330|Caenorhabditis elegans Serpentine
           receptor, class i protein57 protein.
          Length = 330

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 265 VLCFVRQNLRLAQA*NYFPIRSITLVIFLGF 357
           ++CFVR+N  +A     F I ++ ++  +GF
Sbjct: 108 IVCFVRKNQSIAGTLTSFAIPALLIIFLVGF 138


>AF016677-4|AAL11109.2|  304|Caenorhabditis elegans Hypothetical
           protein ZK1240.3 protein.
          Length = 304

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -3

Query: 140 YTVCRVVSAKNITNTSLISPICLPSVAI 57
           +++C++ +AK ITN+ +  P C  +  I
Sbjct: 29  HSICQICAAKLITNSCIYCPFCRETTKI 56


>U41533-13|AAA83174.3|  955|Caenorhabditis elegans Hypothetical
           protein R05F9.12 protein.
          Length = 955

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = -3

Query: 188 VINSLNTLNYNIFTNIYTVCRVVSAKNITNTSLISPICLPSVAIM 54
           ++N  N+ +Y+ F  +Y       +  IT++   S I LP++ I+
Sbjct: 820 IVNDFNSYDYHQFDFMYNSTATGGSVTITHSKKSSKISLPTLDII 864


>Z81047-2|CAB02828.1|  376|Caenorhabditis elegans Hypothetical
           protein C41G6.3 protein.
          Length = 376

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -3

Query: 203 PLDIYVINSLNTLNYNIFTNIYTVCRVVS 117
           P D +V+   +T +Y+I+  IYT+C  ++
Sbjct: 12  PADDHVVYDYDT-DYDIYKTIYTICTKIN 39


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,454,058
Number of Sequences: 27780
Number of extensions: 162697
Number of successful extensions: 254
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)