Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S13A01NGRL0001_A11
         (465 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    27   1.4  
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo...    27   1.9  
SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   5.7  
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch...    25   7.5  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    25   7.5  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    25   7.5  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    24   9.9  

>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 206 KNIEIKILHSLCNLFLFLITMLFVNELNN*RNPTYLLASYFCTL 75
           K+I I+++ S  N      T  F+N  N  RN   L +S+F  L
Sbjct: 237 KDIYIRVICSFVNTGFIDSTNWFLNSFNQRRNSLQLYSSWFIIL 280


>SPCC1682.03c |mug174||meiotically upregulated gene
           Mug174|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 626

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 201 IFVKIQKLWIIVPVKLW*EICQLFLDDFRFLNISIMHNIL 320
           + +K+     +VP+K W    QL L D   L   +++NI+
Sbjct: 1   MLLKVSSCEPLVPIKQWIHTSQLDLSDSSSLVADLLYNII 40


>SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 266

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 316 ILCIILMFKKRKSSRNSWQISYHNFTGTIIQSFCI 212
           ILC+ +M ++R+S     +   HN+ G I  S  +
Sbjct: 52  ILCLTIMCEQRRSWTEMEEKLLHNYQGKIPDSIVV 86


>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -2

Query: 251 PQFYRYNYPKLLYFYKNIEIKILHSL 174
           P+F+    P ++Y  + +EI++L +L
Sbjct: 561 PRFHHQLMPNIVYIDETVEIEVLRAL 586


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 189 FYFYIFVKIQKLWI 230
           +Y YI VK++K WI
Sbjct: 78  YYLYISVKVRKAWI 91


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 246 ILPVQLSKAFVFLQKYRNK 190
           +LP Q+S+ F F QKYR K
Sbjct: 78  LLPEQVSEWFNFYQKYRFK 96


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 328  MFIRILCIILMFKKRKSSRNSW 263
            +F+ +  I+LMF  RKS  +SW
Sbjct: 2189 LFLSMWIIMLMFLGRKSLTHSW 2210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,752,794
Number of Sequences: 5004
Number of extensions: 33013
Number of successful extensions: 82
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)