Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S13A01NGRL0001_A11
         (465 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0761 - 27515441-27515650,27515967-27516074,27516666-275168...    27   5.6  
05_01_0014 - 98258-98366,98413-98476,98887-98925,100569-100998,1...    27   9.8  

>03_05_0761 -
           27515441-27515650,27515967-27516074,27516666-27516839,
           27517185-27517469,27517688-27517920,27519422-27520139
          Length = 575

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -3

Query: 331 KMFIRILCIILMFKKRKSSRNSWQISYHNFTGTIIQSFCIFT 206
           ++FI IL     F +R + R SW  S  N +G + + F   T
Sbjct: 372 ELFIGILSAGSHFTERMAVRRSWMSSVRNSSGAMARFFVALT 413


>05_01_0014 -
           98258-98366,98413-98476,98887-98925,100569-100998,
           101324-101518
          Length = 278

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 15/75 (20%), Positives = 34/75 (45%)
 Frame = -3

Query: 430 MDCQILATVEEKALKFHKATSNEIYKFQL*FKTKMFIRILCIILMFKKRKSSRNSWQISY 251
           MDC  +  V   + ++ +  +  +   +   K++M + ILC    +K  K + +S +   
Sbjct: 66  MDCSWMYHVHRSSTEYREGVTEFVTFAENDRKSRMSMYILCPCRDYKNEKMNLDSSEAHS 125

Query: 250 HNFTGTIIQSFCIFT 206
           H  T   ++ +  +T
Sbjct: 126 HLITNGFMKKYTCWT 140


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,529,644
Number of Sequences: 37544
Number of extensions: 153747
Number of successful extensions: 317
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)