Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S13A01NGRL0001_A11
         (465 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016675-7|AAB66135.1|  387|Caenorhabditis elegans Hypothetical ...    29   2.2  
AL110482-9|CAB60340.3|  372|Caenorhabditis elegans Hypothetical ...    28   3.8  
AF016450-9|AAB65987.3|  295|Caenorhabditis elegans Serpentine re...    27   6.6  
AF022971-13|AAG23979.1|  325|Caenorhabditis elegans Serpentine r...    27   8.8  
AF016678-7|AAB66154.3|  340|Caenorhabditis elegans Serpentine re...    27   8.8  

>AF016675-7|AAB66135.1|  387|Caenorhabditis elegans Hypothetical
           protein T27B7.3 protein.
          Length = 387

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 12/65 (18%), Positives = 32/65 (49%)
 Frame = -3

Query: 445 KITVNMDCQILATVEEKALKFHKATSNEIYKFQL*FKTKMFIRILCIILMFKKRKSSRNS 266
           K+  N+  +++ ++    +KFHK ++   Y+     KT+   +++  + + +++     S
Sbjct: 192 KLDQNIQMKLVQSIWHILMKFHKCSATVAYRKSSDEKTRQLQKVIRNVCLDREKMKMDFS 251

Query: 265 WQISY 251
           W   Y
Sbjct: 252 WMSDY 256


>AL110482-9|CAB60340.3|  372|Caenorhabditis elegans Hypothetical
           protein Y39G8B.4 protein.
          Length = 372

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -1

Query: 246 ILPVQLSKAFVFLQKYRNKNTTFFM*LISFFN 151
           I+ V+ S A  FL+ Y NK+ T+   LI FF+
Sbjct: 150 IVSVERSCASYFLEDYENKSRTWIALLIIFFS 181


>AF016450-9|AAB65987.3|  295|Caenorhabditis elegans Serpentine
           receptor, class t protein69 protein.
          Length = 295

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 164 ISYIKNVVFLFLYFCKNTKA 223
           ISY+  ++ +FL +CKN K+
Sbjct: 174 ISYLAYLIIIFLIYCKNIKS 193


>AF022971-13|AAG23979.1|  325|Caenorhabditis elegans Serpentine
           receptor, class h protein247 protein.
          Length = 325

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = -3

Query: 322 IRILCIILMFKKRKS---SRNSWQISYHNFTGTIIQSFCIFTXXXXXXXXILYVTYFFF 155
           I +L +  +FK+ KS   S  S+Q+  +      +QSF  F         ILYV  F++
Sbjct: 208 IFLLTLYQLFKRNKSFKLSSRSYQLQKNFLIAITLQSFLSFIFIIVPVNIILYVVVFWY 266


>AF016678-7|AAB66154.3|  340|Caenorhabditis elegans Serpentine
           receptor, class i protein45 protein.
          Length = 340

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -2

Query: 260 NFLPQFYRYNYPKLLYFYKNIEIKILHSLCNLFLFLI 150
           + LP F    YP+    + N++   +H L N+++FL+
Sbjct: 174 DLLPGFVNLTYPEFKAEFSNLKNFTIHQL-NIYMFLV 209


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,383,754
Number of Sequences: 27780
Number of extensions: 176939
Number of successful extensions: 402
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)