Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S13A01NGRL0001_A11
         (465 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    27   0.13 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   4.9  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   8.6  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   8.6  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   8.6  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   8.6  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 26.6 bits (56), Expect = 0.13
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 331 KMFIRILCIILMFKKRKSSRNSWQISYHNFT 239
           K+F++ L  ILM ++ K +R  W +   N T
Sbjct: 336 KIFLKYLPTILMMRRPKKTRLRWMMEIPNVT 366


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 5/20 (25%), Positives = 14/20 (70%)
 Frame = -3

Query: 286 RKSSRNSWQISYHNFTGTII 227
           R++  N   + +H++TG+++
Sbjct: 185 RRNVLNKQHVHFHDYTGSVV 204


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +3

Query: 276 DDFRFLNISIMHNI 317
           +D+R L++  +HNI
Sbjct: 74  EDYRILDVDWLHNI 87


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -3

Query: 436 VNMDCQILATVEEKALKFHKA 374
           +N  C +  +  +K L+FH A
Sbjct: 345 LNSTCSVTNSPHQKKLRFHLA 365


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 409 TVEEKALKFHKATSNEIYKFQL*FKTKMFIRILCIILM 296
           T EEK L    +   EI+ F + F + M +R +   LM
Sbjct: 195 TREEKHLPIGASVLFEIFPFCIVFGSDMIVRSIGNSLM 232


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 143 TL*LKKEISYIKNVVFLFLYF 205
           T+ LKK + ++  ++ LFL F
Sbjct: 220 TIILKKTVCFVIPIMLLFLAF 240


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,828
Number of Sequences: 438
Number of extensions: 2547
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12436029
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)