Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S13A01NGRL0001_A09
         (219 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    30   0.036
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe...    25   1.8  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    24   3.1  
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    23   4.1  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    23   5.5  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    23   5.5  
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    23   5.5  
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc...    23   5.5  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    23   5.5  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    23   5.5  
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p...    23   7.2  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    23   7.2  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    22   9.6  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    22   9.6  

>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 30.3 bits (65), Expect = 0.036
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 95  NSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPI 202
           N  V  DG +  VVI  P   F+ P+N  S N+ P+
Sbjct: 402 NHSVTGDGEAKQVVITMPSTHFT-PANNSSANHSPL 436


>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 659

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 119 CRPMEHHYCPPRELCLRQP 63
           C P   H+C    LCL+ P
Sbjct: 25  CSPQTSHWCKYPALCLKSP 43


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 107 PSDGNSDHVVIANPDPFFSQPSNGP 181
           P+ GN D+   +   P +SQPS  P
Sbjct: 85  PAVGNQDYSKPSYSQPSYSQPSQPP 109


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 28  KLRVFLLRRIGHGCRKQSSR 87
           KLR+FL+ R  + CR++S R
Sbjct: 300 KLRLFLMERRYYYCRQRSVR 319


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 74  NRVHVVDNSGVPSDGNSDHVVIANPDPFFSQPS 172
           NR+  V NS      N ++  IAN  P F Q S
Sbjct: 306 NRISQVPNSDYSIYSNFNNFPIANHAPSFPQSS 338


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -3

Query: 106 NTTIVHHVNSVCGSHGQYGEEEKHEAFIVE 17
           NT I+  +  +CG+   +GE ++ + F+ E
Sbjct: 381 NTDILQSLRMICGNLYVHGETQELDHFLGE 410


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +2

Query: 119 NSDHVVIANPDPFFSQPSNGP 181
           N D++  ++ DP +++PS+ P
Sbjct: 467 NGDNIEFSHFDPLYTRPSSHP 487


>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
           Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 131 VVIANPDPFFSQPSNGPSGNYEPIS 205
           V+I +   FF + S G   NY+PI+
Sbjct: 388 VLILHLKRFFYEASGGTQKNYKPIA 412


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 128 HVVIANPDPFFSQPSNGPSGNY 193
           HV ++NPD     P +  S NY
Sbjct: 478 HVSLSNPDFAIGSPMSQDSSNY 499


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 107 PSDGNSDHVVIANPDPFFSQPSNGPSGNYE 196
           P+D NS +V    P  +   P+  P  +YE
Sbjct: 844 PADFNSLNVDFYEPHSYLESPAPEPQPSYE 873


>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 360

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = -2

Query: 152 DPGSQ*QRGHYCRPMEHHYCPPRELCLRQPW 60
           +PG   +   YCR   ++ CP  E     P+
Sbjct: 92  EPGCVCRLCDYCRSGRYNLCPHMEFAATPPY 122


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 134 VIANPDPFFSQPSNGPSGNYEPIST 208
           V A+P+P  S PSNGP+    P+ST
Sbjct: 180 VAASPNP--STPSNGPA----PVST 198


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -2

Query: 92   PPRELCLRQPWP 57
            PPRE     PWP
Sbjct: 1933 PPRERAFDNPWP 1944


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = +2

Query: 80  VHVVDNSGVPSDGNSDHVVIANPDPFFSQPSN 175
           + V+ N+   ++ N ++  + N   FF+ PS+
Sbjct: 316 LEVLSNNNNSNNNNGNNGTVPNAKTFFTPPSS 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 910,045
Number of Sequences: 5004
Number of extensions: 14899
Number of successful extensions: 42
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 52
effective length of database: 2,102,270
effective search space used: 42045400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)